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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 258 259 260 261 262 263 264 265 266 ... 1720 1721 » 13051-13100 / 86044 show all
cchapple-custom	SNP	ti	map_l125_m1_e0	homalt	98.2873	96.6410	99.9906	60.9405	10674	371	10672	1	1	100.0000
asubramanian-gatk	SNP	*	map_siren	homalt	73.1014	57.6093	99.9906	63.4885	31775	23381	31766	3	2	66.6667
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.8228	93.8496	99.9905	28.4361	10422	683	10501	1	1	100.0000
jmaeng-gatk	SNP	tv	*	homalt	99.5328	99.0793	99.9904	20.3157	373651	3472	373637	36	23	63.8889
raldana-dualsentieon	INDEL	I1_5	*	hetalt	95.4134	91.2372	99.9903	60.4923	10214	981	10271	1	1	100.0000
ckim-isaac	SNP	*	segdup	homalt	98.1370	96.3511	99.9903	85.3967	10351	392	10351	1	1	100.0000
raldana-dualsentieon	INDEL	I1_5	HG002compoundhet	hetalt	95.4154	91.2409	99.9902	55.7998	10198	979	10253	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8080	99.6266	99.9901	51.1176	10140	38	10103	1	1	100.0000
ckim-vqsr	SNP	*	HG002complexvar	homalt	98.2744	96.6168	99.9900	20.3688	278811	9763	278787	28	26	92.8571
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.7068	93.6325	99.9899	31.2313	9808	667	9890	1	1	100.0000
raldana-dualsentieon	SNP	ti	HG002complexvar	homalt	99.9811	99.9726	99.9897	18.3281	193410	53	193401	20	20	100.0000
hfeng-pmm1	SNP	tv	*	homalt	99.9869	99.9841	99.9897	20.7747	377063	60	377056	39	21	53.8462
raldana-dualsentieon	INDEL	D1_5	*	hetalt	96.8333	93.8702	99.9896	62.1760	9617	628	9660	1	1	100.0000
raldana-dualsentieon	INDEL	D1_5	HG002compoundhet	hetalt	96.8240	93.8528	99.9896	57.7055	9588	628	9588	1	1	100.0000
hfeng-pmm3	SNP	tv	HG002complexvar	homalt	99.9769	99.9643	99.9895	22.8756	95077	34	95069	10	9	90.0000
ckim-dragen	SNP	tv	HG002complexvar	homalt	99.9600	99.9306	99.9895	22.9484	95045	66	95148	10	10	100.0000
ckim-dragen	SNP	tv	*	homalt	99.9757	99.9621	99.9894	19.9141	376980	143	377083	40	29	72.5000
raldana-dualsentieon	SNP	*	HG002complexvar	homalt	99.9794	99.9695	99.9893	19.8637	288486	88	288471	31	29	93.5484
ckim-vqsr	SNP	ti	HG002complexvar	homalt	98.3712	96.8046	99.9893	18.7775	187281	6182	187271	20	20	100.0000
hfeng-pmm1	SNP	ti	HG002complexvar	homalt	99.9845	99.9798	99.9891	18.4732	193424	39	193416	21	21	100.0000
asubramanian-gatk	SNP	tv	HG002complexvar	homalt	97.9093	95.9142	99.9890	23.2773	91225	3886	91211	10	8	80.0000
cchapple-custom	SNP	ti	map_l100_m2_e1	homalt	98.7103	97.4640	99.9889	57.8502	18025	469	18020	2	2	100.0000
cchapple-custom	SNP	ti	map_l100_m2_e0	homalt	98.7027	97.4493	99.9888	57.8553	17842	467	17837	2	2	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8913	95.8799	99.9888	64.9301	8913	383	8932	1	0	0.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.6101	95.3421	99.9887	62.3644	8863	433	8881	1	0	0.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.7097	93.6390	99.9886	31.7888	8700	591	8743	1	0	0.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.7097	93.6390	99.9886	31.7888	8700	591	8743	1	0	0.0000
cchapple-custom	SNP	ti	map_l100_m1_e0	homalt	98.6915	97.4276	99.9886	54.9898	17498	462	17493	2	2	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.0416	94.2633	99.9886	32.8733	8758	533	8802	1	0	0.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.0416	94.2633	99.9886	32.8733	8758	533	8802	1	0	0.0000
raldana-dualsentieon	SNP	tv	HG002complexvar	homalt	99.9758	99.9632	99.9884	22.8157	95076	35	95070	11	9	81.8182
ckim-gatk	SNP	tv	HG002complexvar	homalt	99.2138	98.4513	99.9883	23.0317	93638	1473	93624	11	8	72.7273
cchapple-custom	SNP	tv	map_siren	homalt	99.0870	98.2019	99.9882	51.4688	16930	310	16915	2	2	100.0000
hfeng-pmm1	SNP	*	HG002complexvar	homalt	99.9818	99.9754	99.9882	20.0017	288503	71	288488	34	32	94.1176
ckim-vqsr	SNP	*	map_siren	homalt	75.3334	60.4322	99.9880	62.9988	33332	21824	33323	4	4	100.0000
dgrover-gatk	SNP	ti	HG002complexvar	homalt	99.9661	99.9447	99.9876	18.3249	193356	107	193346	24	24	100.0000
bgallagher-sentieon	SNP	ti	HG002complexvar	homalt	99.9695	99.9514	99.9876	18.3190	193369	94	193359	24	24	100.0000
astatham-gatk	SNP	ti	HG002complexvar	homalt	99.9545	99.9214	99.9876	18.3169	193311	152	193301	24	24	100.0000
astatham-gatk	SNP	*	HG002complexvar	homalt	99.9516	99.9158	99.9875	19.8527	288331	243	288306	36	34	94.4444
bgallagher-sentieon	SNP	*	HG002complexvar	homalt	99.9685	99.9494	99.9875	19.8511	288428	146	288403	36	34	94.4444
dgrover-gatk	INDEL	I6_15	HG002compoundhet	hetalt	96.6156	93.4637	99.9875	29.8618	7979	558	8020	1	1	100.0000
hfeng-pmm2	SNP	tv	*	homalt	99.9869	99.9862	99.9875	20.9465	377071	52	377066	47	24	51.0638
jlack-gatk	SNP	ti	*	homalt	99.9698	99.9522	99.9874	15.9699	802654	384	802644	101	66	65.3465
bgallagher-sentieon	SNP	tv	HG002complexvar	homalt	99.9663	99.9453	99.9874	22.7972	95059	52	95044	12	10	83.3333
astatham-gatk	SNP	tv	HG002complexvar	homalt	99.9458	99.9043	99.9874	22.8056	95020	91	95005	12	10	83.3333
ckim-dragen	INDEL	I6_15	HG002compoundhet	hetalt	95.5341	91.4607	99.9873	29.2729	7808	729	7849	1	1	100.0000
ltrigg-rtg2	SNP	ti	*	homalt	99.9701	99.9529	99.9873	15.8538	802658	378	802554	102	98	96.0784
ltrigg-rtg2	SNP	*	*	homalt	99.9694	99.9515	99.9872	17.0159	1179585	572	1179505	151	139	92.0530
bgallagher-sentieon	INDEL	I6_15	HG002compoundhet	hetalt	95.3997	91.2147	99.9872	29.5092	7787	750	7827	1	1	100.0000
jlack-gatk	SNP	*	*	homalt	99.9692	99.9511	99.9872	17.3366	1179584	577	1179556	151	96	63.5762

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