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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 257 258 259 260 261 262 263 264 265 ... 1720 1721 » 13001-13050 / 86044 show all
ckim-gatk	SNP	ti	*	homalt	99.6240	99.2571	99.9936	16.1503	797072	5966	797063	51	33	64.7059
bgallagher-sentieon	SNP	*	*	homalt	99.9858	99.9781	99.9936	17.1960	1179902	259	1179878	76	66	86.8421
astatham-gatk	SNP	*	*	homalt	99.9742	99.9548	99.9936	17.1971	1179627	534	1179603	76	67	88.1579
jli-custom	SNP	ti	*	homalt	99.9866	99.9797	99.9934	15.9268	802875	163	802870	53	42	79.2453
raldana-dualsentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.8972	93.9872	99.9932	58.6098	14490	927	14606	1	1	100.0000
ckim-isaac	SNP	tv	*	homalt	98.1562	96.3855	99.9931	16.5795	363492	13631	363515	25	18	72.0000
hfeng-pmm1	SNP	*	*	homalt	99.9908	99.9886	99.9929	18.0449	1180027	134	1180013	84	56	66.6667
ckim-gatk	SNP	*	*	homalt	99.5941	99.1985	99.9929	17.5422	1170702	9459	1170679	83	52	62.6506
ckim-dragen	SNP	ti	*	homalt	99.9710	99.9493	99.9928	15.7227	802631	407	802738	58	51	87.9310
jli-custom	SNP	*	*	homalt	99.9850	99.9771	99.9928	17.2570	1179891	270	1179875	85	66	77.6471
raldana-dualsentieon	SNP	tv	*	homalt	99.9865	99.9801	99.9928	19.7814	377048	75	377042	27	21	77.7778
hfeng-pmm2	SNP	ti	*	homalt	99.9915	99.9903	99.9927	16.7561	802960	78	802952	59	48	81.3559
cchapple-custom	SNP	*	map_l100_m2_e1	homalt	98.7359	97.5104	99.9926	58.6714	27104	692	27093	2	2	100.0000
cchapple-custom	SNP	*	map_l100_m2_e0	homalt	98.7307	97.5003	99.9925	58.6733	26835	688	26824	2	2	100.0000
cchapple-custom	SNP	*	map_l100_m1_e0	homalt	98.7154	97.4707	99.9924	55.8509	26320	683	26310	2	2	100.0000
hfeng-pmm3	SNP	ti	HG002complexvar	homalt	99.9848	99.9773	99.9922	18.4374	193419	44	193409	15	15	100.0000
hfeng-pmm3	SNP	tv	*	homalt	99.9887	99.9854	99.9920	20.6594	377068	55	377060	30	18	60.0000
asubramanian-gatk	SNP	ti	HG002complexvar	homalt	98.1740	96.4210	99.9920	18.6413	186539	6924	186529	15	15	100.0000
dgrover-gatk	SNP	tv	*	homalt	99.9813	99.9706	99.9920	19.9848	377012	111	376997	30	24	80.0000
bgallagher-sentieon	SNP	tv	*	homalt	99.9838	99.9759	99.9918	19.9074	377032	91	377017	31	25	80.6452
ckim-dragen	SNP	*	*	homalt	99.9725	99.9534	99.9917	17.1093	1179611	550	1179821	98	80	81.6327
cchapple-custom	SNP	tv	HG002complexvar	homalt	99.8120	99.6331	99.9915	20.8601	94762	349	94159	8	7	87.5000
jli-custom	SNP	tv	*	homalt	99.9816	99.9716	99.9915	19.9541	377016	107	377005	32	24	75.0000
ckim-gatk	SNP	tv	*	homalt	99.5305	99.0738	99.9914	20.3623	373630	3493	373616	32	19	59.3750
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5260	99.0651	99.9913	63.9562	11444	108	11444	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5260	99.0651	99.9913	63.9562	11444	108	11444	1	1	100.0000
hfeng-pmm3	SNP	*	HG002complexvar	homalt	99.9822	99.9730	99.9913	19.9554	288496	78	288478	25	24	96.0000
raldana-dualsentieon	INDEL	*	HG002compoundhet	hetalt	95.3715	91.1597	99.9913	50.4712	22954	2226	23068	2	2	100.0000
ckim-vqsr	SNP	tv	HG002complexvar	homalt	98.0771	96.2349	99.9913	23.4384	91530	3581	91516	8	6	75.0000
cchapple-custom	SNP	*	map_l150_m2_e1	homalt	98.2494	96.5672	99.9912	69.1407	11421	406	11416	1	1	100.0000
jmaeng-gatk	SNP	ti	*	homalt	99.6264	99.2642	99.9912	16.0789	797129	5909	797120	70	46	65.7143
astatham-gatk	SNP	tv	*	homalt	99.9694	99.9475	99.9912	19.9071	376925	198	376910	33	26	78.7879
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.4262	96.9096	99.9911	63.7599	11195	357	11199	1	1	100.0000
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.4262	96.9096	99.9911	63.7599	11195	357	11199	1	1	100.0000
cchapple-custom	SNP	*	map_l100_m0_e0	homalt	98.1150	96.3081	99.9911	57.3704	11191	429	11188	1	1	100.0000
cchapple-custom	SNP	*	map_l150_m2_e0	homalt	98.2343	96.5382	99.9911	69.1013	11294	405	11290	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.8752	97.7839	99.9911	64.2557	11296	256	11296	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8752	97.7839	99.9911	64.2557	11296	256	11296	1	1	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7471	99.5042	99.9911	53.7923	11240	56	11209	1	1	100.0000
cchapple-custom	SNP	ti	map_l125_m2_e1	homalt	98.3230	96.7097	99.9910	63.9684	11081	377	11078	1	1	100.0000
hfeng-pmm2	SNP	*	*	homalt	99.9900	99.9890	99.9910	18.1427	1180031	130	1180018	106	72	67.9245
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7876	99.5850	99.9909	55.4353	11038	46	11035	1	0	0.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7830	99.5760	99.9909	55.2895	11037	47	11034	1	0	0.0000
jmaeng-gatk	SNP	*	*	homalt	99.5965	99.2051	99.9909	17.4792	1170780	9381	1170757	106	69	65.0943
cchapple-custom	SNP	ti	map_l125_m2_e0	homalt	98.3080	96.6808	99.9909	63.9160	10981	377	10979	1	1	100.0000
cchapple-custom	SNP	*	map_l150_m1_e0	homalt	98.2123	96.4961	99.9908	66.3750	10878	395	10874	1	1	100.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8118	99.6334	99.9908	59.9447	10871	40	10868	1	0	0.0000
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	hetalt	97.1665	94.4976	99.9906	57.5817	10562	615	10618	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	HG002compoundhet	hetalt	97.1381	94.4439	99.9906	55.8738	10556	621	10614	1	1	100.0000
hfeng-pmm2	INDEL	I1_5	HG002compoundhet	hetalt	97.2799	94.7124	99.9906	57.4359	10586	591	10643	1	1	100.0000

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