PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12851-12900 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | homalt | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 5 | 1 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 85.7143 | 1 | 1 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 34.4828 | 20.8333 | 100.0000 | 91.2281 | 5 | 19 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 93.3333 | 1 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.1176 | 1 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.1176 | 1 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | segdup | homalt | 84.8485 | 73.6842 | 100.0000 | 82.3529 | 14 | 5 | 15 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.8127 | 8 | 1 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | homalt | 86.9565 | 76.9231 | 100.0000 | 62.9630 | 10 | 3 | 10 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 33.3333 | 12 | 3 | 12 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 94.0000 | 3 | 4 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 95.0820 | 3 | 4 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.8750 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.9697 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.0588 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 96.3731 | 14 | 1 | 14 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.8873 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.0396 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9884 | 3 | 1 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9931 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9531 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | func_cds | homalt | 91.9708 | 85.1351 | 100.0000 | 31.1475 | 63 | 11 | 84 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.8440 | 0 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.8395 | 0 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | homalt | 83.4646 | 71.6216 | 100.0000 | 91.9283 | 106 | 42 | 126 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | homalt | 81.9444 | 69.4118 | 100.0000 | 94.5573 | 59 | 26 | 67 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | homalt | 86.9565 | 76.9231 | 100.0000 | 98.1767 | 10 | 3 | 13 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7183 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.2500 | 68.4211 | 100.0000 | 96.5570 | 39 | 18 | 45 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7455 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.7807 | 42 | 18 | 48 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7500 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.8545 | 42 | 18 | 48 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9965 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9952 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 50.0000 | 3 | 9 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 98.5294 | 2 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 6.7797 | 3.5088 | 100.0000 | 99.9898 | 2 | 55 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 9.0909 | 4.7619 | 100.0000 | 99.9785 | 2 | 40 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 25.2252 | 14.4330 | 100.0000 | 37.5000 | 14 | 83 | 15 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 10.0000 | 5.2632 | 100.0000 | 98.9583 | 1 | 18 | 1 | 0 | 0 | ||