PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12801-12850 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 100.0000 | 80.0000 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 93.4426 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8912 | 0 | 0 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2617 | 0 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.5418 | 0 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.7949 | 0 | 0 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1977 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4158 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4539 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.9796 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5758 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6048 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.4301 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.5517 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4286 | 0 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9130 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 97.3301 | 11 | 2 | 11 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9952 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 9.0909 | 4.7619 | 100.0000 | 83.3333 | 1 | 20 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m0_e0 | homalt | 82.9268 | 70.8333 | 100.0000 | 86.9231 | 17 | 7 | 17 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m1_e0 | homalt | 83.6364 | 71.8750 | 100.0000 | 80.8333 | 46 | 18 | 46 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.9286 | 72.3077 | 100.0000 | 82.0611 | 47 | 18 | 47 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.6568 | 47 | 20 | 47 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 90.3226 | 9 | 3 | 9 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | homalt | 88.5246 | 79.4118 | 100.0000 | 84.2105 | 27 | 7 | 27 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e0 | homalt | 89.2308 | 80.5556 | 100.0000 | 84.8168 | 29 | 7 | 29 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.9741 | 29 | 8 | 29 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.2078 | 6 | 1 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | homalt | 86.9565 | 76.9231 | 100.0000 | 85.2941 | 20 | 6 | 20 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.0000 | 78.5714 | 100.0000 | 86.0759 | 22 | 6 | 22 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | homalt | 86.2745 | 75.8621 | 100.0000 | 86.2500 | 22 | 7 | 22 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.4887 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.8439 | 4 | 0 | 4 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 2 | 0 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8272 | 5 | 0 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 6 | 0 | 6 | 0 | 0 | ||