PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12751-12800 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0099 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 44.7761 | 37 | 4 | 37 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | func_cds | hetalt | 94.7368 | 90.0000 | 100.0000 | 47.0588 | 9 | 1 | 9 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | func_cds | homalt | 99.5875 | 99.1784 | 100.0000 | 26.2009 | 1690 | 14 | 1690 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.1905 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 71.4286 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | homalt | 92.5848 | 86.1934 | 100.0000 | 67.9954 | 3315 | 531 | 3316 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | homalt | 90.2668 | 82.2602 | 100.0000 | 75.6753 | 1827 | 394 | 1828 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l150_m0_e0 | homalt | 88.6840 | 79.6687 | 100.0000 | 81.7822 | 1058 | 270 | 1059 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | homalt | 91.9496 | 85.0988 | 100.0000 | 74.0535 | 3358 | 588 | 3358 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l150_m2_e0 | homalt | 92.1411 | 85.4274 | 100.0000 | 76.0916 | 3488 | 595 | 3488 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l150_m2_e1 | homalt | 92.2034 | 85.5346 | 100.0000 | 76.0404 | 3536 | 598 | 3535 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m0_e0 | homalt | 85.4599 | 74.6114 | 100.0000 | 95.3201 | 144 | 49 | 144 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | homalt | 86.4721 | 76.1682 | 100.0000 | 89.7193 | 652 | 204 | 652 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m2_e0 | homalt | 87.3121 | 77.4813 | 100.0000 | 90.2170 | 726 | 211 | 726 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m2_e1 | homalt | 87.3139 | 77.4841 | 100.0000 | 90.2591 | 733 | 213 | 733 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8125 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | tech_badpromoters | homalt | 90.1408 | 82.0513 | 100.0000 | 62.3529 | 32 | 7 | 32 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9610 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | homalt | 91.3043 | 84.0000 | 100.0000 | 96.4427 | 21 | 4 | 36 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9979 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9976 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | tech_badpromoters | homalt | 56.5217 | 39.3939 | 100.0000 | 51.7241 | 13 | 20 | 14 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 95.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||