PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12301-12350 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 93.5875 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9821 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.8515 | 19 | 4 | 19 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4791 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_siren | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.4930 | 221 | 26 | 223 | 0 | 0 | ||
| ckim-gatk | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9981 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9975 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.8193 | 75 | 1 | 75 | 0 | 0 | ||
| ckim-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.0864 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9270 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9334 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8384 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9263 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 36.1582 | 226 | 0 | 226 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9487 | 86.8263 | 100.0000 | 68.7764 | 145 | 22 | 148 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6957 | 97.4249 | 100.0000 | 76.3562 | 227 | 6 | 231 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.2366 | 98.4848 | 100.0000 | 80.0604 | 130 | 2 | 132 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.1982 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.6486 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.9613 | 97.9439 | 100.0000 | 73.6658 | 524 | 11 | 528 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.2655 | 82.2581 | 100.0000 | 99.9182 | 102 | 22 | 101 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 85.5263 | 74.7126 | 100.0000 | 99.9004 | 65 | 22 | 64 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8870 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9533 | 21 | 0 | 21 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0211 | 98.0611 | 100.0000 | 42.7615 | 2630 | 52 | 2649 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5647 | 99.1333 | 100.0000 | 30.5303 | 915 | 8 | 917 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 28.9157 | 117 | 8 | 118 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | hetalt | 96.8750 | 93.9394 | 100.0000 | 91.4209 | 31 | 2 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | hetalt | 94.9153 | 90.3226 | 100.0000 | 87.1298 | 112 | 12 | 113 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | hetalt | 94.9580 | 90.4000 | 100.0000 | 87.9958 | 113 | 12 | 115 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | hetalt | 94.8207 | 90.1515 | 100.0000 | 87.7654 | 119 | 13 | 121 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3975 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.7203 | 38 | 2 | 38 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.3775 | 40 | 2 | 40 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 93.5065 | 40 | 3 | 40 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0276 | 9 | 0 | 9 | 0 | 0 | ||