PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12001-12050 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | hetalt | 97.5535 | 95.2239 | 100.0000 | 69.2169 | 319 | 16 | 342 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 80.0000 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 73.5294 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1220 | 90.6977 | 100.0000 | 78.2828 | 78 | 8 | 86 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 18 | 0 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.0448 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 80.8396 | 178 | 0 | 178 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 81.0036 | 108 | 0 | 106 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.2821 | 35 | 0 | 37 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.7209 | 35 | 0 | 35 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.6164 | 89 | 0 | 89 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.9091 | 53 | 0 | 53 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.5172 | 20 | 0 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 81.6092 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.3077 | 25 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7273 | 86.4407 | 100.0000 | 73.8318 | 51 | 8 | 56 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.8992 | 93.9850 | 100.0000 | 87.6557 | 125 | 8 | 109 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.0874 | 94.3396 | 100.0000 | 86.5762 | 100 | 6 | 89 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.1818 | 96.4286 | 100.0000 | 61.3333 | 27 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4012 | 98.8095 | 100.0000 | 80.3121 | 166 | 2 | 164 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.4253 | 98.8571 | 100.0000 | 67.2285 | 173 | 2 | 175 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 92.0863 | 22 | 4 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 77.5510 | 19 | 4 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 37 | 0 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.5652 | 13 | 0 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.4407 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 78.5714 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.7500 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.9394 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8276 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 86.9919 | 15 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdup | * | 100.0000 | 100.0000 | 100.0000 | 96.6284 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 97.2540 | 24 | 0 | 24 | 0 | 0 | ||