PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1151-1200 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 99.2767 | 0 | 0 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 99.3562 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.5714 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.6183 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.5833 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.5037 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.7135 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6744 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.5516 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.7396 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 99.3363 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 99.4859 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.6528 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.6212 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.6835 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.6491 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 99.6894 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 99.6564 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 99.2537 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 99.5025 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.2603 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.4762 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 66.6667 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 96.6292 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 94.6429 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 95.0820 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 91.4286 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8254 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 100.0000 | 95.6522 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.2248 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 100.0000 | 100.0000 | 100.0000 | 98.9011 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 94.3182 | 0 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 97.1429 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | * | * | 46.1538 | 30.0000 | 100.0000 | 98.8636 | 3 | 7 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | * | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 100.0000 | 98.1818 | 0 | 0 | 1 | 0 | 0 | ||