PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 231 232 233 234 235 236 237 238 239 ... 1720 1721 » 11701-11750 / 86044 show all
ckim-gatk	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.4048	1	2	1	0	0
ckim-gatk	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	95.1915	59	1	59	0	0
ckim-gatk	INDEL	D1_5	map_siren	hetalt	93.6709	88.0952	100.0000	91.2218	74	10	74	0	0
ckim-gatk	INDEL	D1_5	segdup	hetalt	98.0392	96.1538	100.0000	95.6336	50	2	51	0	0
ckim-gatk	INDEL	D1_5	segdupwithalt	*	100.0000	100.0000	100.0000	99.9960	1	0	1	0	0
ckim-gatk	INDEL	D1_5	segdupwithalt	het	100.0000	100.0000	100.0000	99.9946	1	0	1	0	0
ckim-gatk	INDEL	D1_5	tech_badpromoters	*	97.2973	94.7368	100.0000	48.5714	18	1	18	0	0
ckim-gatk	INDEL	D1_5	tech_badpromoters	het	93.3333	87.5000	100.0000	58.8235	7	1	7	0	0
ckim-gatk	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
ckim-gatk	INDEL	D1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	43.7500	9	0	9	0	0
ckim-gatk	INDEL	D6_15	decoy	hetalt	100.0000	100.0000	100.0000	99.2647	1	0	1	0	0
ckim-gatk	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	56.5657	43	0	43	0	0
ckim-gatk	INDEL	D6_15	func_cds	het	100.0000	100.0000	100.0000	53.9683	29	0	29	0	0
ckim-gatk	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
ckim-gatk	INDEL	D6_15	func_cds	homalt	100.0000	100.0000	100.0000	61.2903	12	0	12	0	0
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	97.1831	6	0	6	0	0
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.8873	3	0	3	0	0
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	98.0769	1	0	1	0	0
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	56.6265	36	3	36	0	0
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	97.8723	4	0	4	0	0
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	98.4252	2	0	2	0	0
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	84.6154	2	0	2	0	0
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	92.0000	2	0	2	0	0
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	93.3333	1	0	1	0	0
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	75.0000	1	0	1	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	100.0000	100.0000	100.0000	82.3810	74	0	74	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.1788	9	0	9	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	100.0000	100.0000	100.0000	99.8102	6	0	6	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3971	98.8014	100.0000	18.5915	577	7	578	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	97.8947	95.8763	100.0000	22.5000	93	4	93	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	36.3636	21	0	21	0	0
ckim-gatk	INDEL	D6_15	map_l100_m0_e0	hetalt	97.2973	94.7368	100.0000	83.3333	18	1	18	0	0
ckim-gatk	INDEL	D6_15	map_l100_m0_e0	homalt	97.8723	95.8333	100.0000	90.6883	23	1	23	0	0
ckim-gatk	INDEL	D6_15	map_l100_m1_e0	hetalt	96.1832	92.6471	100.0000	73.9669	63	5	63	0	0
ckim-gatk	INDEL	D6_15	map_l100_m1_e0	homalt	98.4127	96.8750	100.0000	86.9748	62	2	62	0	0
ckim-gatk	INDEL	D6_15	map_l100_m2_e0	hetalt	96.1832	92.6471	100.0000	75.2941	63	5	63	0	0
ckim-gatk	INDEL	D6_15	map_l100_m2_e0	homalt	98.4375	96.9231	100.0000	87.4251	63	2	63	0	0
ckim-gatk	INDEL	D6_15	map_l100_m2_e1	hetalt	95.7143	91.7808	100.0000	75.0929	67	6	67	0	0
ckim-gatk	INDEL	D6_15	map_l100_m2_e1	homalt	98.4848	97.0149	100.0000	87.3294	65	2	65	0	0
ckim-gatk	INDEL	D6_15	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	90.9091	6	0	6	0	0
ckim-gatk	INDEL	D6_15	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	93.1429	12	0	12	0	0
ckim-gatk	INDEL	D6_15	map_l125_m1_e0	hetalt	97.2973	94.7368	100.0000	86.2595	18	1	18	0	0
ckim-gatk	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	89.5899	33	1	33	0	0
ckim-gatk	INDEL	D6_15	map_l125_m2_e0	hetalt	97.2973	94.7368	100.0000	87.6712	18	1	18	0	0
ckim-gatk	INDEL	D6_15	map_l125_m2_e0	homalt	98.5915	97.2222	100.0000	89.6450	35	1	35	0	0
ckim-gatk	INDEL	D6_15	map_l125_m2_e1	hetalt	94.7368	90.0000	100.0000	88.0000	18	2	18	0	0
ckim-gatk	INDEL	D6_15	map_l125_m2_e1	homalt	98.6301	97.2973	100.0000	89.5652	36	1	36	0	0
ckim-gatk	INDEL	D6_15	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	91.2281	5	0	5	0	0
ckim-gatk	INDEL	D6_15	map_l150_m0_e0	homalt	100.0000	100.0000	100.0000	95.0704	7	0	7	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge