PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11401-11450 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 100.0000 | 97.0149 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 100.0000 | 97.8261 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4090 | 0 | 0 | 131 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 88.6364 | 0 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.8187 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.3855 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3271 | 0 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5205 | 0 | 0 | 40 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.5275 | 0 | 0 | 68 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 100.0000 | 99.9057 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.8948 | 0 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9380 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5652 | 0 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.5789 | 0 | 0 | 8 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.0820 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5752 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.9350 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.0159 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7778 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5455 | 0 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5055 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5946 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3125 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8042 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8904 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.4444 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.2958 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.7742 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.3333 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5876 | 0 | 0 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 100.0000 | 99.0545 | 0 | 0 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.3518 | 0 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0916 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.8495 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5039 | 0 | 0 | 29 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.2000 | 0 | 0 | 30 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 89.0909 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 92.9936 | 0 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 95.3704 | 0 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 87.7551 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 2 | 0 | 0 | ||