PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
10451-10500 / 86044 show all | |||||||||||||||
jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.0149 | 2 | 0 | 2 | 0 | 0 | ||
jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 96.7742 | 93.7500 | 100.0000 | 99.8986 | 15 | 1 | 15 | 0 | 0 | ||
jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.5610 | 95.2381 | 100.0000 | 99.9606 | 20 | 1 | 21 | 0 | 0 | ||
jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 26.0870 | 117 | 8 | 119 | 0 | 0 | ||
jli-custom | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.7082 | 10 | 1 | 10 | 0 | 0 | ||
jli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 92.6078 | 36 | 4 | 36 | 0 | 0 | ||
jli-custom | INDEL | * | map_l125_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 93.1777 | 38 | 4 | 38 | 0 | 0 | ||
jli-custom | INDEL | * | map_l125_m2_e1 | hetalt | 93.8272 | 88.3721 | 100.0000 | 93.2981 | 38 | 5 | 38 | 0 | 0 | ||
jli-custom | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.5556 | 8 | 1 | 8 | 0 | 0 | ||
jli-custom | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.2255 | 18 | 3 | 18 | 0 | 0 | ||
jli-custom | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8333 | 18 | 3 | 18 | 0 | 0 | ||
jli-custom | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.6916 | 19 | 4 | 19 | 0 | 0 | ||
jli-custom | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.9487 | 4 | 2 | 4 | 0 | 0 | ||
jli-custom | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3051 | 4 | 2 | 4 | 0 | 0 | ||
jli-custom | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3471 | 4 | 2 | 4 | 0 | 0 | ||
jli-custom | INDEL | * | segdup | hetalt | 96.8254 | 93.8462 | 100.0000 | 94.4815 | 122 | 8 | 124 | 0 | 0 | ||
jli-custom | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9971 | 1 | 0 | 1 | 0 | 0 | ||
jli-custom | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9953 | 1 | 0 | 1 | 0 | 0 | ||
jli-custom | INDEL | * | tech_badpromoters | * | 97.9866 | 96.0526 | 100.0000 | 53.7975 | 73 | 3 | 73 | 0 | 0 | ||
jli-custom | INDEL | * | tech_badpromoters | het | 96.0000 | 92.3077 | 100.0000 | 51.3514 | 36 | 3 | 36 | 0 | 0 | ||
jli-custom | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
jli-custom | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.5789 | 33 | 0 | 33 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.7604 | 93.7241 | 100.0000 | 26.3804 | 1807 | 121 | 1920 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.1549 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.2278 | 4 | 0 | 4 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7261 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.0701 | 96.2133 | 100.0000 | 37.0181 | 1245 | 49 | 1356 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.8837 | 10 | 1 | 13 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.2558 | 19 | 0 | 23 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 48.1481 | 12 | 0 | 14 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 46.4467 | 211 | 0 | 211 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.1661 | 96.3983 | 100.0000 | 32.2115 | 910 | 34 | 987 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.4456 | 96.9388 | 100.0000 | 33.7549 | 760 | 24 | 838 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6049 | 84.5103 | 100.0000 | 35.3276 | 371 | 68 | 454 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.8824 | 12 | 0 | 15 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.0882 | 23 | 0 | 23 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9688 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9940 | 15 | 0 | 15 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4520 | 96.9512 | 100.0000 | 38.2784 | 318 | 10 | 337 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 22.7273 | 49 | 2 | 51 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 61.8644 | 45 | 0 | 45 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 43.9024 | 22 | 3 | 23 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3846 | 4 | 0 | 5 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.5047 | 22 | 4 | 23 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.3103 | 22 | 4 | 24 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.5714 | 25 | 5 | 27 | 0 | 0 |