PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10301-10350 / 86044 show all
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
90.4762
82.6087
100.0000
13.6364
1941900
jlack-gatkINDELI1_5map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
94.1558
90900
jlack-gatkINDELI1_5map_l100_m1_e0hetalt
95.2381
90.9091
100.0000
90.1720
4044000
jlack-gatkINDELI1_5map_l100_m2_e0hetalt
95.2381
90.9091
100.0000
90.9502
4044000
jlack-gatkINDELI1_5map_l100_m2_e1hetalt
95.3488
91.1111
100.0000
90.8686
4144100
jlack-gatkINDELI1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.4286
40400
jlack-gatkINDELI1_5map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
94.1781
1701700
jlack-gatkINDELI1_5map_l125_m2_e0hetalt
97.2973
94.7368
100.0000
94.5122
1811800
jlack-gatkINDELI1_5map_l125_m2_e1hetalt
97.2973
94.7368
100.0000
94.5619
1811800
jlack-gatkINDELI1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
96.6292
30300
jlack-gatkINDELI1_5map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
95.8716
90900
jlack-gatkINDELI1_5map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
96.4286
90900
jlack-gatkINDELI1_5map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
96.1089
1001000
jlack-gatkINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.4127
20200
jlack-gatkINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.6842
20200
jlack-gatkINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7013
20200
jlack-gatkINDELI1_5map_sirenhetalt
97.2477
94.6429
100.0000
87.9682
106610600
jlack-gatkINDELI1_5segduphetalt
97.8723
95.8333
100.0000
96.2036
4624700
jlack-gatkINDELI1_5tech_badpromoters*
100.0000
100.0000
100.0000
52.1739
2202200
jlack-gatkINDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
42.8571
80800
jlack-gatkINDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
jlack-gatkINDELI1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
56.6667
1301300
jlack-gatkINDELI6_15func_cdshet
100.0000
100.0000
100.0000
44.1860
2402400
jlack-gatkINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
40.0000
31300
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
87.0370
77.0492
100.0000
56.0748
47144700
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.7055
91.7647
100.0000
59.8985
7877900
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5885
99.1803
100.0000
71.7290
121112100
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
61.7188
4844900
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.0228
98.0645
100.0000
83.4056
152315300
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.1870
98.3871
100.0000
87.0021
6116200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.6744
95.4545
100.0000
75.1479
4224200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.2464
4904900
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8657
20200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4751
20200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.6856
95.4758
100.0000
43.1608
6122961500
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200het
95.5224
91.4286
100.0000
91.0394
3232500
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.2199
92.7152
100.0000
45.9559
1401114700
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
62.1795
5905900
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200*
91.6667
84.6154
100.0000
70.2703
1121100
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
90.9091
83.3333
100.0000
38.8889
1021100
jlack-gatkINDELI6_15map_l100_m0_e0hetalt
85.7143
75.0000
100.0000
93.0233
31300
jlack-gatkINDELI6_15map_l100_m0_e0homalt
100.0000
100.0000
100.0000
89.8305
1201200
jlack-gatkINDELI6_15map_l100_m1_e0hetalt
95.2381
90.9091
100.0000
83.0508
2022000
jlack-gatkINDELI6_15map_l100_m2_e0hetalt
95.2381
90.9091
100.0000
84.6154
2022000
jlack-gatkINDELI6_15map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
85.0746
2022000
jlack-gatkINDELI6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
93.0233
60600
jlack-gatkINDELI6_15map_l125_m1_e0hetalt
93.3333
87.5000
100.0000
89.2308
71700
jlack-gatkINDELI6_15map_l125_m2_e0hetalt
93.3333
87.5000
100.0000
91.0256
71700
jlack-gatkINDELI6_15map_l125_m2_e1hetalt
93.3333
87.5000
100.0000
91.2500
71700
jlack-gatkINDELI6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
94.0299
40400