PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10201-10250 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | tech_badpromoters | * | 98.6667 | 97.3684 | 100.0000 | 53.4591 | 74 | 2 | 74 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | tech_badpromoters | het | 97.3684 | 94.8718 | 100.0000 | 50.0000 | 37 | 2 | 37 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.6774 | 93.5685 | 100.0000 | 26.2024 | 1804 | 124 | 1918 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 98.9708 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 98.9950 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.7543 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.1102 | 96.2906 | 100.0000 | 36.5079 | 1246 | 48 | 1360 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.9506 | 10 | 1 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.7481 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3197 | 98.6486 | 100.0000 | 73.3087 | 438 | 6 | 434 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.6190 | 19 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6283 | 99.2593 | 100.0000 | 60.5341 | 268 | 2 | 266 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 48.1481 | 12 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.2210 | 96.5042 | 100.0000 | 31.7460 | 911 | 33 | 989 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.8917 | 99.7835 | 100.0000 | 57.3148 | 461 | 1 | 461 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.3798 | 96.8112 | 100.0000 | 33.4921 | 759 | 25 | 838 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7487 | 99.4987 | 100.0000 | 63.3764 | 397 | 2 | 397 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6049 | 84.5103 | 100.0000 | 34.8074 | 371 | 68 | 457 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 100.0000 | 100.0000 | 100.0000 | 81.4499 | 87 | 0 | 87 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 84.0532 | 52 | 0 | 48 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.4427 | 23 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4370 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6216 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7654 | 97.5610 | 100.0000 | 37.6838 | 320 | 8 | 339 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 23.8806 | 49 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 60.5263 | 45 | 0 | 45 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 45.2381 | 22 | 3 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 45.8333 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 4 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.2277 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 77.3913 | 24 | 6 | 26 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.5507 | 97.1429 | 100.0000 | 75.5102 | 34 | 1 | 36 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.2089 | 89 | 0 | 89 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.2336 | 53 | 0 | 53 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 20 | 0 | 20 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0225 | 16 | 0 | 16 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 88.6792 | 79.6610 | 100.0000 | 71.7391 | 47 | 12 | 52 | 0 | 0 | ||