PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10151-10200 / 86044 show all
hfeng-pmm2SNPtvmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
83.8710
2002000
hfeng-pmm2SNPtvmap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
83.8710
2002000
hfeng-pmm2SNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.5484
40400
hfeng-pmm2SNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
92.9577
50500
hfeng-pmm2SNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
92.9577
50500
hfeng-pmm2SNPtvmap_sirenhetalt
99.3789
98.7654
100.0000
75.3846
8018000
hfeng-pmm2SNPtvsegduphetalt
100.0000
100.0000
100.0000
97.5862
70700
hfeng-pmm2SNPtvtech_badpromotershet
98.4615
96.9697
100.0000
42.8571
3213200
hfeng-pmm3INDEL*decoy*
100.0000
100.0000
100.0000
99.9223
1001000
hfeng-pmm3INDEL*decoyhet
100.0000
100.0000
100.0000
99.9272
60600
hfeng-pmm3INDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8325
10100
hfeng-pmm3INDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9254
30300
hfeng-pmm3INDEL*func_cds*
99.6618
99.3258
100.0000
42.1121
442344400
hfeng-pmm3INDEL*func_cdshet
99.5305
99.0654
100.0000
46.0957
212221400
hfeng-pmm3INDEL*func_cdshetalt
88.8889
80.0000
100.0000
63.6364
41400
hfeng-pmm3INDEL*func_cdshomalt
100.0000
100.0000
100.0000
37.0474
226022600
hfeng-pmm3INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
95.6522
91.6667
100.0000
99.3844
1111100
hfeng-pmm3INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0297
30300
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
92.9487
86.8263
100.0000
68.5775
1452214800
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4166
1001000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.6667
30300
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
98.2533
96.5665
100.0000
76.0711
225822900
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
98.8506
97.7273
100.0000
79.4025
129313100
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
98.1982
21200
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.6301
11100
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.2963
10100
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.4820
97.0093
100.0000
73.5592
5191652300
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8696
1601600
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7925
97.6137
100.0000
42.2217
261864263700
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5101
99.0249
100.0000
30.0763
914991600
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
96.2656
92.8000
100.0000
29.5181
116911700
hfeng-pmm3INDEL*map_l100_m0_e0hetalt
95.2381
90.9091
100.0000
90.9621
3033100
hfeng-pmm3INDEL*map_l100_m1_e0hetalt
94.0171
88.7097
100.0000
86.3804
1101411100
hfeng-pmm3INDEL*map_l100_m2_e0hetalt
94.0678
88.8000
100.0000
87.3176
1111411300
hfeng-pmm3INDEL*map_l100_m2_e1hetalt
93.5484
87.8788
100.0000
87.1739
1161611800
hfeng-pmm3INDEL*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
95.0893
1101100
hfeng-pmm3INDEL*map_l125_m1_e0hetalt
97.4359
95.0000
100.0000
92.2131
3823800
hfeng-pmm3INDEL*map_l125_m2_e0hetalt
96.2963
92.8571
100.0000
93.1338
3933900
hfeng-pmm3INDEL*map_l125_m2_e1hetalt
95.1220
90.6977
100.0000
93.2642
3943900
hfeng-pmm3INDEL*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
94.6429
90900
hfeng-pmm3INDEL*map_l150_m1_e0hetalt
97.5610
95.2381
100.0000
94.4904
2012000
hfeng-pmm3INDEL*map_l150_m2_e0hetalt
97.5610
95.2381
100.0000
95.2607
2012000
hfeng-pmm3INDEL*map_l150_m2_e1hetalt
95.4545
91.3043
100.0000
95.1501
2122100
hfeng-pmm3INDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
96.9388
60600
hfeng-pmm3INDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
97.5610
60600
hfeng-pmm3INDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
97.6096
60600
hfeng-pmm3INDEL*map_sirenhetalt
96.0000
92.3077
100.0000
86.8270
2281923000
hfeng-pmm3INDEL*segduphetalt
96.0000
92.3077
100.0000
94.6374
1201012200
hfeng-pmm3INDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9970
10100
hfeng-pmm3INDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9951
10100