PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10101-10150 / 86044 show all
hfeng-pmm2SNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
71.4286
2402400
hfeng-pmm2SNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
76.0000
2402400
hfeng-pmm2SNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
76.0000
2402400
hfeng-pmm2SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
hfeng-pmm2SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
76.5625
1501500
hfeng-pmm2SNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm2SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm2SNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
88.8889
40400
hfeng-pmm2SNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
87.5000
50500
hfeng-pmm2SNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
87.5000
50500
hfeng-pmm2SNPtimap_sirenhetalt
99.1150
98.2456
100.0000
73.3333
5615600
hfeng-pmm2SNPtisegduphetalt
100.0000
100.0000
100.0000
98.9011
20200
hfeng-pmm2SNPtitech_badpromotershet
98.8506
97.7273
100.0000
46.2500
4314300
hfeng-pmm2SNPtv*hetalt
99.8851
99.7704
100.0000
49.0323
869286900
hfeng-pmm2SNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
39.9610
308230800
hfeng-pmm2SNPtvHG002compoundhethetalt
99.8839
99.7680
100.0000
23.2143
860286000
hfeng-pmm2SNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
hfeng-pmm2SNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
25.9774
17040170400
hfeng-pmm2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
85.3659
1211200
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.1176
1501500
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
54.1905
481048100
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
63.9450
786078600
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
68.9533
525052500
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4048
98.8166
100.0000
87.0810
501650100
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4641
98.9339
100.0000
86.2965
464546400
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.4706
30300
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.1176
1501500
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
96.2963
10100
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
87.5000
77.7778
100.0000
96.4646
72700
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
70.5882
50500
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
59.8035
38870388700
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
70.5882
50500
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_quadTR_51to200het
73.6842
58.3333
100.0000
90.7080
21152100
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
35.8158
13101131000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.0769
10100
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.3684
10100
hfeng-pmm2SNPtvmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
79.4872
1601600
hfeng-pmm2SNPtvmap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
76.9663
4104100
hfeng-pmm2SNPtvmap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
78.8945
4204200
hfeng-pmm2SNPtvmap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
78.5000
4304300
hfeng-pmm2SNPtvmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
90900
hfeng-pmm2SNPtvmap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
77.7778
3003000
hfeng-pmm2SNPtvmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
80.8917
3003000
hfeng-pmm2SNPtvmap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
80.8917
3003000
hfeng-pmm2SNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
94.0000
30300
hfeng-pmm2SNPtvmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
81.3084
2002000