PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10051-10100 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5000 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5862 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 44.8529 | 75 | 2 | 75 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 47.9821 | 580 | 2 | 580 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 39.5280 | 205 | 2 | 205 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.7577 | 577 | 2 | 577 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | func_cds | homalt | 99.9905 | 99.9810 | 100.0000 | 20.6798 | 5274 | 1 | 5274 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 90.0000 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.2581 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8634 | 99.7271 | 100.0000 | 46.4273 | 1462 | 4 | 1462 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8249 | 99.6503 | 100.0000 | 48.5869 | 855 | 3 | 855 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 92.2535 | 66 | 3 | 66 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4337 | 98.8739 | 100.0000 | 85.4007 | 439 | 5 | 439 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7382 | 99.4778 | 100.0000 | 83.7872 | 381 | 2 | 381 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.2581 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.9407 | 99.8815 | 100.0000 | 65.8566 | 1686 | 2 | 1686 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.6552 | 81.2500 | 100.0000 | 97.7586 | 13 | 3 | 13 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.3529 | 70.0000 | 100.0000 | 98.1723 | 7 | 3 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9388 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 37.3409 | 3987 | 0 | 3987 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0588 | 94.2857 | 100.0000 | 94.0325 | 33 | 2 | 33 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 95.9770 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 94.8454 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5455 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.8739 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.8065 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.2000 | 31 | 0 | 31 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 8 | 0 | 8 | 0 | 0 | ||