PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9951-10000 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.8362 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.6802 | 42 | 0 | 42 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.2828 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.6119 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.7692 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.7692 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0556 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | * | 99.3007 | 98.6111 | 100.0000 | 49.6454 | 71 | 1 | 71 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 40.7407 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 55.1724 | 39 | 0 | 39 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9312 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9394 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8400 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9253 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 37.9121 | 226 | 0 | 226 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0297 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9487 | 86.8263 | 100.0000 | 68.9076 | 145 | 22 | 148 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0306 | 96.1373 | 100.0000 | 76.6393 | 224 | 9 | 228 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.4615 | 96.9697 | 100.0000 | 80.1527 | 128 | 4 | 130 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.2609 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.7179 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.7701 | 97.5701 | 100.0000 | 73.5650 | 522 | 13 | 525 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8857 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7925 | 97.6137 | 100.0000 | 42.7983 | 2618 | 64 | 2637 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3457 | 98.6999 | 100.0000 | 30.6231 | 911 | 12 | 913 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 29.3413 | 117 | 8 | 118 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l100_m0_e0 | hetalt | 96.8750 | 93.9394 | 100.0000 | 91.4667 | 31 | 2 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l100_m1_e0 | hetalt | 94.0171 | 88.7097 | 100.0000 | 87.4150 | 110 | 14 | 111 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l100_m2_e0 | hetalt | 94.0678 | 88.8000 | 100.0000 | 88.2780 | 111 | 14 | 113 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l100_m2_e1 | hetalt | 93.9759 | 88.6364 | 100.0000 | 88.0522 | 117 | 15 | 119 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.0057 | 37 | 3 | 37 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l125_m2_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 93.6275 | 39 | 3 | 39 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.7400 | 39 | 4 | 39 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1351 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9749 | 20 | 1 | 20 | 0 | 0 | ||