PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9851-9900 / 86044 show all
hfeng-pmm1SNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
77.6119
3003000
hfeng-pmm1SNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
80.7692
3003000
hfeng-pmm1SNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
80.7692
3003000
hfeng-pmm1SNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
94.0000
30300
hfeng-pmm1SNP*map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
81.3084
2002000
hfeng-pmm1SNP*map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
83.8710
2002000
hfeng-pmm1SNP*map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
83.8710
2002000
hfeng-pmm1SNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.5484
40400
hfeng-pmm1SNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
92.9577
50500
hfeng-pmm1SNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
93.0556
50500
hfeng-pmm1SNP*map_sirenhetalt
99.3789
98.7654
100.0000
75.3846
8018000
hfeng-pmm1SNP*segduphetalt
100.0000
100.0000
100.0000
97.5610
70700
hfeng-pmm1SNP*tech_badpromoters*
99.3590
98.7261
100.0000
46.3668
155215500
hfeng-pmm1SNP*tech_badpromotershet
98.6842
97.4026
100.0000
42.7481
7527500
hfeng-pmm1SNP*tech_badpromotershomalt
100.0000
100.0000
100.0000
49.3671
8008000
hfeng-pmm1SNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
38.6228
205220500
hfeng-pmm1SNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.5503
577257700
hfeng-pmm1SNPtifunc_cdshetalt
100.0000
100.0000
100.0000
52.9412
80800
hfeng-pmm1SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.7037
52741527400
hfeng-pmm1SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6721
99.3464
100.0000
64.9669
12168121600
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.3567
1201200
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7779
99.5567
100.0000
51.9264
11235112300
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9659
99.9318
100.0000
45.7608
14651146500
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7122
99.4260
100.0000
47.8270
242514242500
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5550
99.1139
100.0000
47.7303
156614156600
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
47.9369
858085800
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.7778
95.6522
100.0000
91.3158
6636600
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.4444
10100
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4337
98.8739
100.0000
84.5259
439543900
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.7500
10100
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.7382
99.4778
100.0000
83.0516
381238100
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.8333
20200
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7927
99.5863
100.0000
78.9598
240710240700
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.3567
1201200
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_11to50*
98.3717
96.7955
100.0000
67.5515
4682155468200
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_11to50het
97.5094
95.1398
100.0000
68.6617
2995153299500
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9407
99.8815
100.0000
65.2514
16862168600
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_51to200*
89.6552
81.2500
100.0000
97.7193
1331300
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_51to200het
82.3529
70.0000
100.0000
98.2005
73700
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.6667
60600
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8275
99.6556
100.0000
44.5296
405114405100
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
hfeng-pmm1SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
100.0000
100.0000
100.0000
36.5834
39870398700
hfeng-pmm1SNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
97.0588
94.2857
100.0000
93.2099
3323300
hfeng-pmm1SNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
94.7368
71700
hfeng-pmm1SNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
93.6709
51500
hfeng-pmm1SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.2963
20200