PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9601-9650 / 86044 show all
hfeng-pmm3SNP*tech_badpromoters*
99.3590
98.7261
100.0000
45.9930
155215500
hfeng-pmm3SNP*tech_badpromotershet
98.6842
97.4026
100.0000
43.1818
7527500
hfeng-pmm3SNP*tech_badpromotershomalt
100.0000
100.0000
100.0000
48.3871
8008000
hfeng-pmm3SNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
37.3089
205220500
hfeng-pmm3SNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.4462
577257700
hfeng-pmm3SNPtifunc_cdshetalt
100.0000
100.0000
100.0000
55.5556
80800
hfeng-pmm3SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.5962
52741527400
hfeng-pmm3SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
88.0952
51500
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9317
99.8636
100.0000
45.3935
14642146400
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7328
99.4670
100.0000
48.0069
242613242600
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5869
99.1772
100.0000
48.3179
156713156700
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
47.4265
858085800
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.4545
91.3043
100.0000
91.5663
6366300
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.4444
10100
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.0909
98.1982
100.0000
84.3053
436843600
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.7500
10100
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.7382
99.4778
100.0000
82.6739
381238100
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.1220
20200
hfeng-pmm3SNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.7368
10100
hfeng-pmm3SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9407
99.8815
100.0000
64.4454
16862168600
hfeng-pmm3SNPtilowcmp_SimpleRepeat_diTR_51to200*
89.6552
81.2500
100.0000
97.8930
1331300
hfeng-pmm3SNPtilowcmp_SimpleRepeat_diTR_51to200het
82.3529
70.0000
100.0000
98.3945
73700
hfeng-pmm3SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.6667
60600
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8398
99.6802
100.0000
44.8107
405213405200
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
hfeng-pmm3SNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
83.3333
10100
hfeng-pmm3SNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
85.7143
100.0000
93.5065
3053000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7776
99.5561
100.0000
29.2802
246711246600
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
95.5128
71700
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
94.7917
51500
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.6667
20200
hfeng-pmm3SNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
74.5455
1401400
hfeng-pmm3SNPtimap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
73.8739
2902900
hfeng-pmm3SNPtimap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
75.8065
3003000
hfeng-pmm3SNPtimap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
75.2000
3103100
hfeng-pmm3SNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
80.0000
80800
hfeng-pmm3SNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
71.4286
2402400
hfeng-pmm3SNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
76.0000
2402400
hfeng-pmm3SNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
76.0000
2402400
hfeng-pmm3SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
hfeng-pmm3SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
76.5625
1501500
hfeng-pmm3SNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm3SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm3SNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
88.2353
40400
hfeng-pmm3SNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
86.8421
50500
hfeng-pmm3SNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
86.8421
50500
hfeng-pmm3SNPtimap_sirenhetalt
99.1150
98.2456
100.0000
72.8155
5615600
hfeng-pmm3SNPtisegduphetalt
100.0000
100.0000
100.0000
98.8764
20200