PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9551-9600 / 86044 show all
hfeng-pmm3INDELI6_15segdup*
99.4253
98.8571
100.0000
91.7776
173217300
hfeng-pmm3INDELI6_15segduphet
99.3939
98.7952
100.0000
92.6060
8218200
hfeng-pmm3INDELI6_15segduphetalt
98.8764
97.7778
100.0000
89.6956
4414400
hfeng-pmm3INDELI6_15segduphomalt
100.0000
100.0000
100.0000
91.7254
4704700
hfeng-pmm3INDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
53.5714
1301300
hfeng-pmm3INDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
53.3333
70700
hfeng-pmm3INDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
hfeng-pmm3INDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
57.1429
30300
hfeng-pmm3SNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
37.5254
308230800
hfeng-pmm3SNP*HG002compoundhethetalt
99.8839
99.7680
100.0000
22.8700
860286000
hfeng-pmm3SNP*func_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
hfeng-pmm3SNP*func_cdshomalt
99.9928
99.9857
100.0000
21.9899
69781697800
hfeng-pmm3SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.8571
1211200
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.9781
22502225000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7285
99.4585
100.0000
57.4142
385721385700
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5772
99.1580
100.0000
57.3253
247321247300
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
57.5506
13830138300
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
96.2264
92.7273
100.0000
91.5980
102810200
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.0981
98.2124
100.0000
84.5390
9341793400
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4690
98.9437
100.0000
83.2738
843984300
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.8333
30300
hfeng-pmm3SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
hfeng-pmm3SNP*lowcmp_SimpleRepeat_diTR_51to200homalt
96.5517
93.3333
100.0000
95.6656
1411400
hfeng-pmm3SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.5648
99.1334
100.0000
32.4169
457640457200
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200*
94.1176
88.8889
100.0000
96.2617
81800
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200het
92.3077
85.7143
100.0000
95.8904
61600
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.0588
20200
hfeng-pmm3SNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
79.7468
1601600
hfeng-pmm3SNP*map_l100_m1_e0hetalt
100.0000
100.0000
100.0000
76.7045
4104100
hfeng-pmm3SNP*map_l100_m2_e0hetalt
100.0000
100.0000
100.0000
78.5714
4204200
hfeng-pmm3SNP*map_l100_m2_e1hetalt
100.0000
100.0000
100.0000
78.1726
4304300
hfeng-pmm3SNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
85.2459
90900
hfeng-pmm3SNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
77.7778
3003000
hfeng-pmm3SNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
80.8917
3003000
hfeng-pmm3SNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
80.8917
3003000
hfeng-pmm3SNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
94.1176
30300
hfeng-pmm3SNP*map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
81.3084
2002000
hfeng-pmm3SNP*map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
83.8710
2002000
hfeng-pmm3SNP*map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
83.8710
2002000
hfeng-pmm3SNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.4426
40400
hfeng-pmm3SNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
92.7536
50500
hfeng-pmm3SNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
92.7536
50500
hfeng-pmm3SNP*map_sirenhetalt
99.3789
98.7654
100.0000
75.0779
8018000
hfeng-pmm3SNP*segduphetalt
100.0000
100.0000
100.0000
97.5352
70700