PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 186 187 188 189 190 191 192 193 194 ... 1720 1721 » 9451-9500 / 86044 show all
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.5952	84.4937	100.0000	38.5463	534	98	558	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.2723	92.8126	100.0000	27.2105	4313	334	4363	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.9697	94.1176	100.0000	25.6765	3792	237	3818	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.2383	92.7494	100.0000	31.0430	4426	346	4476	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.6611	93.5380	100.0000	39.2016	5515	381	5574	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.9533	94.0867	100.0000	30.1357	3580	225	3605	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	74.7720	59.7087	100.0000	57.0934	123	83	124	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	het	89.7959	81.4815	100.0000	98.0952	22	5	2	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	72.1429	56.4246	100.0000	29.0698	101	78	122	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.3923	96.8354	100.0000	72.8559	306	10	307	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.9924	1	0	1	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.9812	1	0	1	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7466	97.5243	100.0000	41.8848	1103	28	1110	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.6667	93.5484	100.0000	39.7183	203	14	214	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	100.0000	100.0000	100.0000	98.9011	1	0	1	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3569	98.7220	100.0000	35.2201	309	4	309	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	95.4545	91.3043	100.0000	12.5000	21	2	21	0	0
hfeng-pmm3	INDEL	I1_5	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	93.5252	9	0	9	0	0
hfeng-pmm3	INDEL	I1_5	map_l100_m1_e0	hetalt	96.4706	93.1818	100.0000	88.1503	41	3	41	0	0
hfeng-pmm3	INDEL	I1_5	map_l100_m2_e0	hetalt	96.4706	93.1818	100.0000	89.2670	41	3	41	0	0
hfeng-pmm3	INDEL	I1_5	map_l100_m2_e1	hetalt	96.5517	93.3333	100.0000	89.2308	42	3	42	0	0
hfeng-pmm3	INDEL	I1_5	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	95.8763	4	0	4	0	0
hfeng-pmm3	INDEL	I1_5	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	92.7660	17	0	17	0	0
hfeng-pmm3	INDEL	I1_5	map_l125_m2_e0	hetalt	97.2973	94.7368	100.0000	93.3824	18	1	18	0	0
hfeng-pmm3	INDEL	I1_5	map_l125_m2_e1	hetalt	97.2973	94.7368	100.0000	93.5018	18	1	18	0	0
hfeng-pmm3	INDEL	I1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	95.7746	3	0	3	0	0
hfeng-pmm3	INDEL	I1_5	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	94.8571	9	0	9	0	0
hfeng-pmm3	INDEL	I1_5	map_l150_m2_e0	hetalt	100.0000	100.0000	100.0000	95.6731	9	0	9	0	0
hfeng-pmm3	INDEL	I1_5	map_l150_m2_e1	hetalt	100.0000	100.0000	100.0000	95.3271	10	0	10	0	0
hfeng-pmm3	INDEL	I1_5	map_l250_m0_e0	het	96.5517	93.3333	100.0000	98.1283	14	1	14	0	0
hfeng-pmm3	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	97.8495	2	0	2	0	0
hfeng-pmm3	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.3607	2	0	2	0	0
hfeng-pmm3	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.3871	2	0	2	0	0
hfeng-pmm3	INDEL	I1_5	map_siren	hetalt	98.1818	96.4286	100.0000	86.7647	108	4	108	0	0
hfeng-pmm3	INDEL	I1_5	segdup	hetalt	96.7742	93.7500	100.0000	95.9965	45	3	46	0	0
hfeng-pmm3	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	54.1667	22	0	22	0	0
hfeng-pmm3	INDEL	I1_5	tech_badpromoters	het	100.0000	100.0000	100.0000	42.8571	8	0	8	0	0
hfeng-pmm3	INDEL	I1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
hfeng-pmm3	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	59.3750	13	0	13	0	0
hfeng-pmm3	INDEL	I6_15	HG002complexvar	hetalt	97.0105	94.1946	100.0000	56.3370	1152	71	1192	0	0
hfeng-pmm3	INDEL	I6_15	HG002compoundhet	hetalt	96.4396	93.1240	100.0000	29.8754	7950	587	7990	0	0
hfeng-pmm3	INDEL	I6_15	func_cds	*	98.8235	97.6744	100.0000	37.3134	42	1	42	0	0
hfeng-pmm3	INDEL	I6_15	func_cds	het	100.0000	100.0000	100.0000	36.8421	24	0	24	0	0
hfeng-pmm3	INDEL	I6_15	func_cds	hetalt	85.7143	75.0000	100.0000	25.0000	3	1	3	0	0
hfeng-pmm3	INDEL	I6_15	func_cds	homalt	100.0000	100.0000	100.0000	40.0000	15	0	15	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.7263	84.7170	100.0000	48.5116	449	81	467	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.1538	92.5926	100.0000	78.0702	75	6	75	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.0901	81.9672	100.0000	54.1284	50	11	50	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0014	98.0226	100.0000	68.5068	347	7	348	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.8571	97.7401	100.0000	71.8699	173	4	173	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge