PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9401-9450 / 86044 show all
hfeng-pmm3INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
84.0183
3503500
hfeng-pmm3INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
100.0000
100.0000
100.0000
73.3533
8908900
hfeng-pmm3INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
72.1053
5305300
hfeng-pmm3INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
2002000
hfeng-pmm3INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
80.9524
1601600
hfeng-pmm3INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
92.0000
85.1852
100.0000
91.1504
2342000
hfeng-pmm3INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
90.7407
83.0508
100.0000
74.3842
49105200
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
66.6667
50.0000
100.0000
75.0000
11200
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
100.0000
100.0000
100.0000
86.9565
1501500
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
96.2963
92.8571
100.0000
60.5634
2622800
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
97.6608
95.4286
100.0000
67.1845
167816900
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
89.3617
80.7692
100.0000
91.1392
2152100
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
90.4762
82.6087
100.0000
76.1364
1942100
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
68.2927
1301300
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
79.4872
80800
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
66.6667
50.0000
100.0000
84.6154
22200
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
60.0000
20200
hfeng-pmm3INDELI16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
90.0000
10100
hfeng-pmm3INDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
92.8571
21200
hfeng-pmm3INDELI16_PLUSmap_l100_m2_e0hetalt
80.0000
66.6667
100.0000
94.1176
21200
hfeng-pmm3INDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
94.2857
21200
hfeng-pmm3INDELI16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
85.7143
10100
hfeng-pmm3INDELI16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
89.4737
21200
hfeng-pmm3INDELI16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.6667
21200
hfeng-pmm3INDELI16_PLUSmap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
91.6667
21200
hfeng-pmm3INDELI16_PLUSmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
75.0000
10100
hfeng-pmm3INDELI16_PLUSmap_l150_m1_e0hetalt
66.6667
50.0000
100.0000
92.3077
11100
hfeng-pmm3INDELI16_PLUSmap_l150_m2_e0hetalt
66.6667
50.0000
100.0000
93.3333
11100
hfeng-pmm3INDELI16_PLUSmap_l150_m2_e1hetalt
66.6667
50.0000
100.0000
93.3333
11100
hfeng-pmm3INDELI16_PLUSmap_sirenhetalt
96.7742
93.7500
100.0000
87.6923
1511600
hfeng-pmm3INDELI16_PLUSsegduphet
100.0000
100.0000
100.0000
95.1120
2402400
hfeng-pmm3INDELI16_PLUSsegduphetalt
100.0000
100.0000
100.0000
97.3510
40400
hfeng-pmm3INDELI16_PLUStech_badpromoters*
100.0000
100.0000
100.0000
69.2308
40400
hfeng-pmm3INDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
66.6667
20200
hfeng-pmm3INDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
20200
hfeng-pmm3INDELI1_5func_cds*
99.7214
99.4444
100.0000
33.8235
179118000
hfeng-pmm3INDELI1_5func_cdshet
99.1453
98.3051
100.0000
39.1753
5815900
hfeng-pmm3INDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
hfeng-pmm3INDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
30.8140
119011900
hfeng-pmm3INDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.4044
84.1695
100.0000
41.9118
75514279000
hfeng-pmm3INDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8917
10100
hfeng-pmm3INDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.2973
10100
hfeng-pmm3INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3996
94.9310
100.0000
60.6737
5637301567400
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6611
93.5380
100.0000
39.2016
5515381557400
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
92.9936
86.9048
100.0000
60.1093
73117300
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8885
10100
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0588
10100
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
98.1818
96.4286
100.0000
74.6479
108410800
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
99.1597
98.3333
100.0000
80.7818
5915900
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
77.8772
346034600