PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9301-9350 / 86044 show all | |||||||||||||||
hfeng-pmm3 | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 51.7241 | 42 | 1 | 42 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 48.1481 | 28 | 1 | 28 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 12 | 0 | 12 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.5207 | 3 | 0 | 3 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6190 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1408 | 82.0513 | 100.0000 | 61.4458 | 32 | 7 | 32 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8235 | 97.6744 | 100.0000 | 76.5363 | 42 | 1 | 42 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.5155 | 4 | 0 | 4 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.1651 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.1963 | 94.5455 | 100.0000 | 63.9456 | 52 | 3 | 53 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.8750 | 93.9394 | 100.0000 | 63.6364 | 31 | 2 | 32 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2424 | 98.4962 | 100.0000 | 80.9731 | 262 | 4 | 262 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0228 | 98.0645 | 100.0000 | 82.9596 | 152 | 3 | 152 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.6301 | 97.2973 | 100.0000 | 63.2653 | 36 | 1 | 36 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.8786 | 74 | 0 | 74 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1045 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.1468 | 98.3080 | 100.0000 | 27.7467 | 1162 | 20 | 1164 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4836 | 98.9726 | 100.0000 | 18.6798 | 578 | 6 | 579 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8870 | 99.7743 | 100.0000 | 32.1045 | 442 | 1 | 442 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 30.0000 | 21 | 0 | 21 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 87.8307 | 23 | 1 | 23 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 94.5736 | 89.7059 | 100.0000 | 71.7593 | 61 | 7 | 61 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 83.3333 | 62 | 2 | 62 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 94.5736 | 89.7059 | 100.0000 | 73.5931 | 61 | 7 | 61 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 84.0909 | 63 | 2 | 63 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 73.7705 | 64 | 9 | 64 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 84.0686 | 65 | 2 | 65 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 92.0000 | 46 | 1 | 46 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 92.7273 | 28 | 1 | 28 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.1765 | 12 | 0 | 12 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2609 | 96.5812 | 100.0000 | 88.8008 | 113 | 4 | 113 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m1_e0 | het | 98.4127 | 96.8750 | 100.0000 | 90.4908 | 62 | 2 | 62 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 84.0708 | 18 | 1 | 18 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 86.4754 | 33 | 1 | 33 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.9757 | 96.0317 | 100.0000 | 89.1577 | 121 | 5 | 121 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 90.5556 | 68 | 3 | 68 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.2595 | 18 | 1 | 18 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6000 | 95.3125 | 100.0000 | 89.3263 | 122 | 6 | 122 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.8417 | 95.7746 | 100.0000 | 90.7609 | 68 | 3 | 68 | 0 | 0 |