PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9251-9300 / 86044 show all | |||||||||||||||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.7421 | 10 | 0 | 10 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.5830 | 7 | 0 | 7 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2537 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 80.5479 | 71 | 3 | 71 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9083 | 99.8168 | 100.0000 | 76.0545 | 545 | 1 | 545 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6697 | 99.3415 | 100.0000 | 79.4752 | 1056 | 7 | 1056 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5413 | 99.0868 | 100.0000 | 78.2783 | 651 | 6 | 651 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.0504 | 36 | 1 | 36 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 80.2674 | 369 | 0 | 369 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.1020 | 85.3602 | 100.0000 | 31.3904 | 1102 | 189 | 1130 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 77.4032 | 63.1365 | 100.0000 | 29.1489 | 310 | 181 | 333 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.6436 | 97.3236 | 100.0000 | 71.2545 | 400 | 11 | 401 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9990 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9909 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0193 | 98.0576 | 100.0000 | 32.2402 | 1464 | 29 | 1467 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.7987 | 95.6923 | 100.0000 | 23.4223 | 622 | 28 | 631 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7831 | 99.5671 | 100.0000 | 29.1217 | 460 | 2 | 460 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.4829 | 1330 | 0 | 1330 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.4783 | 87.7551 | 100.0000 | 29.5082 | 43 | 6 | 43 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.3702 | 12 | 2 | 12 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.3820 | 89.3617 | 100.0000 | 89.9761 | 42 | 5 | 42 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 90.2655 | 43 | 5 | 44 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.8454 | 90.1961 | 100.0000 | 89.8925 | 46 | 5 | 47 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5410 | 3 | 0 | 3 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.3125 | 12 | 1 | 12 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.6229 | 13 | 2 | 13 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.7377 | 13 | 2 | 13 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0588 | 6 | 1 | 6 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4138 | 6 | 1 | 6 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.0711 | 7 | 1 | 7 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4578 | 13 | 0 | 13 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3214 | 3 | 0 | 3 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 92.5433 | 56 | 1 | 56 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8102 | 3 | 0 | 3 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 93.2262 | 59 | 1 | 59 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 3 | 0 | 3 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 93.4004 | 59 | 1 | 59 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | map_siren | hetalt | 95.6522 | 91.6667 | 100.0000 | 89.9478 | 77 | 7 | 77 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3425 | 50 | 2 | 51 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8242 | 359 | 0 | 359 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9892 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 45.7143 | 19 | 0 | 19 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8900 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1150 | 1 | 0 | 1 | 0 | 0 |