PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9201-9250 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.8276 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 94.5946 | 6 | 1 | 6 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.3125 | 6 | 1 | 6 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4783 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 94.9275 | 7 | 1 | 7 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.0149 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.2222 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.4359 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_siren | hetalt | 97.1429 | 94.4444 | 100.0000 | 77.5578 | 68 | 4 | 68 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | * | 98.5507 | 97.1429 | 100.0000 | 91.7715 | 170 | 5 | 170 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | het | 98.7805 | 97.5904 | 100.0000 | 92.5346 | 81 | 2 | 81 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.0693 | 43 | 2 | 43 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 91.6058 | 46 | 1 | 46 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 53.5714 | 13 | 0 | 13 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 36.8852 | 308 | 2 | 308 | 0 | 0 | ||
| jli-custom | SNP | * | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.0769 | 860 | 2 | 860 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2963 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.2086 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7895 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9249 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9437 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6198 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9339 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 159 | 0 | 160 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1558 | 85 | 0 | 86 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 28.8462 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.4122 | 85.8946 | 100.0000 | 32.3455 | 1565 | 257 | 1598 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.8124 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.6742 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2754 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.1875 | 85.5072 | 100.0000 | 55.6391 | 59 | 10 | 59 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6109 | 99.2248 | 100.0000 | 62.0178 | 256 | 2 | 256 | 0 | 0 | ||