PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8901-8950 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 96.5517 | 93.3333 | 100.0000 | 97.0464 | 14 | 1 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 62.1849 | 45 | 0 | 45 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 91.3043 | 84.0000 | 100.0000 | 42.5000 | 21 | 4 | 23 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.5833 | 4 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 75.7895 | 22 | 4 | 23 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.4706 | 22 | 4 | 24 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 75.4545 | 25 | 5 | 27 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.8454 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4338 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5347 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.1724 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.6970 | 14 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.7883 | 16 | 0 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 94.8553 | 16 | 0 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.1963 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4619 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 97.4874 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.4196 | 26 | 5 | 28 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | segdup | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.8033 | 8 | 1 | 10 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8621 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9281 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9465 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6429 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9352 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5238 | 74 | 0 | 74 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.6795 | 11 | 0 | 11 | 0 | 0 | ||