PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8851-8900 / 86044 show all
egarrison-hhgaINDEL*map_l125_m0_e0hetalt
84.2105
72.7273
100.0000
96.6346
83700
egarrison-hhgaINDEL*map_l125_m1_e0hetalt
88.8889
80.0000
100.0000
93.5841
3282900
egarrison-hhgaINDEL*map_l125_m2_e0hetalt
89.4737
80.9524
100.0000
94.1288
3483100
egarrison-hhgaINDEL*map_l150_m0_e0hetalt
80.0000
66.6667
100.0000
96.9325
63500
egarrison-hhgaINDEL*map_l150_m1_e0hetalt
92.3077
85.7143
100.0000
95.2941
1831600
egarrison-hhgaINDEL*map_l150_m2_e0hetalt
92.3077
85.7143
100.0000
95.9799
1831600
egarrison-hhgaINDEL*map_l150_m2_e1hetalt
90.4762
82.6087
100.0000
95.8838
1941700
egarrison-hhgaINDEL*map_l250_m0_e0homalt
97.9592
96.0000
100.0000
97.4710
2412400
egarrison-hhgaINDEL*map_l250_m1_e0hetalt
90.9091
83.3333
100.0000
97.3118
51500
egarrison-hhgaINDEL*map_l250_m2_e0hetalt
90.9091
83.3333
100.0000
97.8355
51500
egarrison-hhgaINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
97.8992
51500
egarrison-hhgaINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9993
10100
egarrison-hhgaINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9952
10100
egarrison-hhgaINDEL*tech_badpromotershetalt
85.7143
75.0000
100.0000
57.1429
31300
egarrison-hhgaINDEL*tech_badpromotershomalt
100.0000
100.0000
100.0000
60.2410
3303300
egarrison-hhgaINDELC6_15*homalt
0.0000
0.0000
100.0000
97.1429
00100
egarrison-hhgaINDELC6_15HG002complexvar*
40.0000
25.0000
100.0000
96.7213
13200
egarrison-hhgaINDELC6_15HG002complexvarhet
40.0000
25.0000
100.0000
83.3333
13100
egarrison-hhgaINDELC6_15HG002complexvarhomalt
0.0000
0.0000
100.0000
93.7500
00100
egarrison-hhgaINDELD16_PLUSdecoy*
90.9091
83.3333
100.0000
98.5836
51500
egarrison-hhgaINDELD16_PLUSdecoyhet
85.7143
75.0000
100.0000
98.7805
31300
egarrison-hhgaINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
97.8261
20200
egarrison-hhgaINDELD16_PLUSfunc_cds*
100.0000
100.0000
100.0000
57.1429
1201200
egarrison-hhgaINDELD16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
60.0000
80800
egarrison-hhgaINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
42.8571
40400
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
94.7522
90.0277
100.0000
59.1990
3253632600
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
58.8235
41.6667
100.0000
57.1429
57600
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.2840
98.5782
100.0000
47.3418
208320800
jli-customINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
98.8571
60600
jli-customINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
98.8506
40400
jli-customINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.6395
20200
jli-customINDELD16_PLUSfunc_cds*
100.0000
100.0000
100.0000
74.4681
1201200
jli-customINDELD16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
76.4706
80800
jli-customINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
69.2308
40400
jli-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.7199
10100
jli-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
90.0000
81.8182
100.0000
84.4156
921200
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.7110
10100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2054
98.4234
100.0000
72.6469
437743300
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
94.4444
89.4737
100.0000
70.4225
1722100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6283
99.2593
100.0000
59.6970
268226600
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.6522
91.6667
100.0000
43.4783
1111300
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
99.4220
98.8506
100.0000
80.7606
8618600
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
99.0291
98.0769
100.0000
83.2143
5114700
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
56.7568
1201600
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.3077
2302300
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
88.5246
79.4118
100.0000
96.1864
54145400
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
84.2105
72.7273
100.0000
96.1585
32123200
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
94.1176
88.8889
100.0000
92.6606
81800