PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8801-8850 / 86044 show all
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.5124
525052500
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
91.8699
4014000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.5045
99.0138
100.0000
86.4030
502550200
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5717
99.1471
100.0000
85.6437
465446500
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.1818
30300
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8328
99.6662
100.0000
79.7916
14935149300
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
87.5000
1501500
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.8333
10100
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7731
99.5473
100.0000
61.3407
17598175900
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200*
98.0392
96.1538
100.0000
96.9512
2512500
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200het
96.9697
94.1176
100.0000
97.4400
1611600
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.3368
90900
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
70.5882
50500
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.3333
60600
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8855
99.7712
100.0000
34.7956
13083130800
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5714
10100
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
dgrover-gatkSNPtvmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
69.8113
1601600
dgrover-gatkSNPtvmap_l100_m1_e0hetalt
98.7654
97.5610
100.0000
71.2230
4014000
dgrover-gatkSNPtvmap_l100_m2_e0hetalt
98.7952
97.6190
100.0000
73.7179
4114100
dgrover-gatkSNPtvmap_l100_m2_e1hetalt
98.8235
97.6744
100.0000
73.2484
4214200
dgrover-gatkSNPtvmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
77.5000
90900
dgrover-gatkSNPtvmap_l125_m1_e0hetalt
98.3051
96.6667
100.0000
72.3810
2912900
dgrover-gatkSNPtvmap_l125_m2_e0hetalt
98.3051
96.6667
100.0000
77.1654
2912900
dgrover-gatkSNPtvmap_l125_m2_e1hetalt
98.3051
96.6667
100.0000
77.1654
2912900
dgrover-gatkSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
dgrover-gatkSNPtvmap_l150_m1_e0hetalt
97.4359
95.0000
100.0000
76.8293
1911900
dgrover-gatkSNPtvmap_l150_m2_e0hetalt
97.4359
95.0000
100.0000
80.8081
1911900
dgrover-gatkSNPtvmap_l150_m2_e1hetalt
97.4359
95.0000
100.0000
80.8081
1911900
dgrover-gatkSNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
90.6977
40400
dgrover-gatkSNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
90.0000
50500
dgrover-gatkSNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
90.0000
50500
dgrover-gatkSNPtvmap_sirenhetalt
98.7500
97.5309
100.0000
70.3008
7927900
dgrover-gatkSNPtvsegduphetalt
100.0000
100.0000
100.0000
96.8750
70700
dgrover-gatkSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
56.1644
3213200
egarrison-hhgaINDEL*decoy*
88.8889
80.0000
100.0000
99.9914
82800
egarrison-hhgaINDEL*decoyhet
90.9091
83.3333
100.0000
99.9443
51500
egarrison-hhgaINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9340
30300
egarrison-hhgaINDEL*func_cdshetalt
88.8889
80.0000
100.0000
60.0000
41400
egarrison-hhgaINDEL*func_cdshomalt
100.0000
100.0000
100.0000
35.0575
226022600
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
99.0385
21100
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
57.1429
40.0000
100.0000
99.8373
23200
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
98.9583
21100
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.8337
22200
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
70.4663
54.4000
100.0000
33.0000
68576700
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
37.3333
4704700