PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8751-8800 / 86044 show all
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
46.7081
858085800
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.7778
95.6522
100.0000
90.3790
6636600
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.4444
10100
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3197
98.6486
100.0000
84.6316
438643800
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.7500
10100
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.6068
99.2167
100.0000
83.4783
380338000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.3077
20200
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
84.4156
1201200
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8814
99.7630
100.0000
64.2235
16844168400
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200*
96.7742
93.7500
100.0000
97.8784
1511500
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200het
94.7368
90.0000
100.0000
98.3114
91900
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.5318
60600
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
83.3333
10100
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
99.9749
100.0000
34.7199
39861398600
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
85.7143
100.0000
92.9245
3053000
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.5205
80800
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.8571
60600
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.7742
20200
dgrover-gatkSNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
65.0000
1401400
dgrover-gatkSNPtimap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
68.8172
2902900
dgrover-gatkSNPtimap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
70.5882
3003000
dgrover-gatkSNPtimap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
69.9029
3103100
dgrover-gatkSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
71.4286
80800
dgrover-gatkSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
64.1791
2402400
dgrover-gatkSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
70.7317
2402400
dgrover-gatkSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
70.7317
2402400
dgrover-gatkSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
30300
dgrover-gatkSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
70.0000
1501500
dgrover-gatkSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
74.5763
1501500
dgrover-gatkSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
74.5763
1501500
dgrover-gatkSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
84.0000
40400
dgrover-gatkSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
82.1429
50500
dgrover-gatkSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
82.1429
50500
dgrover-gatkSNPtimap_sirenhetalt
99.1150
98.2456
100.0000
68.8889
5615600
dgrover-gatkSNPtisegduphetalt
100.0000
100.0000
100.0000
98.6207
20200
dgrover-gatkSNPtitech_badpromotershet
98.8506
97.7273
100.0000
48.1928
4314300
dgrover-gatkSNPtv*hetalt
99.8275
99.6556
100.0000
41.6667
868386800
dgrover-gatkSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
36.3636
308230800
dgrover-gatkSNPtvHG002compoundhethetalt
99.8257
99.6520
100.0000
22.7518
859385900
dgrover-gatkSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
dgrover-gatkSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.6351
17040170400
dgrover-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
64.4942
523152300
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.0986
1211200
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
87.5000
1501500
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
46.0762
481048100
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.1570
786078600