PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8701-8750 / 86044 show all
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
87.5000
1501500
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
51.6129
22502225000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
57.1296
13830138300
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.1481
96.3636
100.0000
91.0017
106410600
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4183
98.8433
100.0000
85.6313
9401194000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5875
99.1784
100.0000
84.7445
845784500
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.1818
30300
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
87.5000
1501500
dgrover-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.8333
10100
dgrover-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8260
99.6527
100.0000
62.8065
344312344300
dgrover-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
97.5610
95.2381
100.0000
97.3788
4024000
dgrover-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200het
96.1538
92.5926
100.0000
97.8411
2522500
dgrover-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.9016
1501500
dgrover-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
70.5882
50500
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
93.5065
87.8049
100.0000
92.9961
3653600
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.8333
90900
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.0355
70700
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.3333
20200
dgrover-gatkSNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
69.8113
1601600
dgrover-gatkSNP*map_l100_m1_e0hetalt
98.7654
97.5610
100.0000
71.2230
4014000
dgrover-gatkSNP*map_l100_m2_e0hetalt
98.7952
97.6190
100.0000
73.7179
4114100
dgrover-gatkSNP*map_l100_m2_e1hetalt
98.8235
97.6744
100.0000
73.2484
4214200
dgrover-gatkSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
77.5000
90900
dgrover-gatkSNP*map_l125_m1_e0hetalt
98.3051
96.6667
100.0000
72.3810
2912900
dgrover-gatkSNP*map_l125_m2_e0hetalt
98.3051
96.6667
100.0000
77.1654
2912900
dgrover-gatkSNP*map_l125_m2_e1hetalt
98.3051
96.6667
100.0000
77.1654
2912900
dgrover-gatkSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
dgrover-gatkSNP*map_l150_m1_e0hetalt
97.4359
95.0000
100.0000
76.8293
1911900
dgrover-gatkSNP*map_l150_m2_e0hetalt
97.4359
95.0000
100.0000
80.8081
1911900
dgrover-gatkSNP*map_l150_m2_e1hetalt
97.4359
95.0000
100.0000
80.8081
1911900
dgrover-gatkSNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
90.6977
40400
dgrover-gatkSNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
90.0000
50500
dgrover-gatkSNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
90.0000
50500
dgrover-gatkSNP*map_sirenhetalt
98.7500
97.5309
100.0000
70.3008
7927900
dgrover-gatkSNP*segduphetalt
100.0000
100.0000
100.0000
96.8750
70700
dgrover-gatkSNP*tech_badpromotershet
98.6842
97.4026
100.0000
51.9231
7527500
dgrover-gatkSNPti*hetalt
99.8279
99.6564
100.0000
41.2361
580258000
dgrover-gatkSNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
35.9375
205220500
dgrover-gatkSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.2372
577257700
dgrover-gatkSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
50.0000
80800
dgrover-gatkSNPtifunc_cdshomalt
99.9716
99.9431
100.0000
19.7443
52723527200
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
88.3721
51500
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
84.4156
1201200
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9317
99.8636
100.0000
43.1014
14642146400