PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8401-8450 / 86044 show all
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200het
83.3333
71.4286
100.0000
95.6140
52500
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
97.0588
11100
egarrison-hhgaSNP*map_l125_m0_e0hetalt
87.5000
77.7778
100.0000
88.1356
72700
egarrison-hhgaSNP*map_l125_m1_e0hetalt
96.5517
93.3333
100.0000
78.2946
2822800
egarrison-hhgaSNP*map_l125_m2_e0hetalt
96.5517
93.3333
100.0000
81.3333
2822800
egarrison-hhgaSNP*map_l125_m2_e1hetalt
96.5517
93.3333
100.0000
81.4570
2822800
egarrison-hhgaSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
93.8776
30300
egarrison-hhgaSNP*map_l150_m1_e0hetalt
94.7368
90.0000
100.0000
82.0000
1821800
egarrison-hhgaSNP*map_l150_m2_e0hetalt
94.7368
90.0000
100.0000
84.6154
1821800
egarrison-hhgaSNP*map_l150_m2_e1hetalt
94.7368
90.0000
100.0000
84.8739
1821800
egarrison-hhgaSNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
95.9184
22200
egarrison-hhgaSNP*map_l250_m2_e0hetalt
75.0000
60.0000
100.0000
95.0820
32300
egarrison-hhgaSNP*map_l250_m2_e1hetalt
75.0000
60.0000
100.0000
95.0820
32300
egarrison-hhgaSNP*segduphetalt
100.0000
100.0000
100.0000
97.8528
70700
egarrison-hhgaSNP*tech_badpromotershomalt
100.0000
100.0000
100.0000
50.6173
8008000
egarrison-hhgaSNPtiHG002compoundhethetalt
99.5663
99.1364
100.0000
22.9530
574557400
egarrison-hhgaSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
52.9412
80800
egarrison-hhgaSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.9919
52732527300
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
91.4894
1201200
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.9184
20200
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
91.4894
1201200
egarrison-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
90.9091
10100
egarrison-hhgaSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
95.2381
51500
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
87.0968
77.1429
100.0000
90.2174
2782700
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200*
76.9231
62.5000
100.0000
95.1456
53500
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200het
80.0000
66.6667
100.0000
94.9367
42400
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
95.8333
11100
egarrison-hhgaSNPtimap_l125_m0_e0hetalt
85.7143
75.0000
100.0000
85.0000
62600
ckim-isaacSNPtvHG002complexvarhetalt
93.4708
87.7419
100.0000
29.5337
2723827200
ckim-isaacSNPtvHG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
ckim-isaacSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
28.5714
1001000
ckim-isaacSNPtvfunc_cdshomalt
99.0820
98.1808
100.0000
21.0849
167331167300
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
57.1429
1211200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.2222
94.5946
100.0000
40.2102
4552645500
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
78.5714
30300
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
71.4286
55.5556
100.0000
92.8571
54500
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
64.2857
50500