PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83601-83650 / 86044 show all
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
27.9022
100.0000
137354000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
80.1538
100.0000
521129000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
qzeng-customINDELD1_5map_l100_m0_e0hetalt
85.7143
100.0000
122000
qzeng-customINDELD1_5map_l125_m0_e0hetalt
66.6667
100.0000
21000
qzeng-customINDELD1_5map_l150_m0_e0hetalt
50.0000
100.0000
11000
qzeng-customINDELD1_5map_l150_m1_e0hetalt
57.1429
100.0000
43000
qzeng-customINDELD1_5map_l150_m2_e0hetalt
57.1429
100.0000
43000
qzeng-customINDELD1_5map_l150_m2_e1hetalt
62.5000
100.0000
53000
qzeng-customINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
qzeng-customINDELD1_5map_l250_m1_e0hetalt
66.6667
100.0000
21000
qzeng-customINDELD1_5map_l250_m2_e0hetalt
66.6667
100.0000
21000
qzeng-customINDELD1_5map_l250_m2_e1hetalt
66.6667
100.0000
21000
qzeng-customINDELD1_5segduphetalt
92.3077
100.0000
484000
qzeng-customINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
qzeng-customINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
qzeng-customINDELD6_15*hetalt
81.6614
100.0000
66751499000
qzeng-customINDELD6_15HG002complexvarhetalt
85.8835
100.0000
870143000
qzeng-customINDELD6_15HG002compoundhethetalt
81.6710
100.0000
66571494000
qzeng-customINDELD6_15decoy*
100.0000
100.0000
10000
qzeng-customINDELD6_15decoyhet
0.0000
100.0000
00000
qzeng-customINDELD6_15decoyhomalt
0.0000
100.0000
00000
qzeng-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
67.5824
100.0000
1599767000
qzeng-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.6723
100.0000
5836976000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
81.4493
100.0000
65641495000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
66.6667
100.0000
2613000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
80.0000
100.0000
4411000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
66.1007
100.0000
1129579000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
10000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
80.6665
100.0000
57371375000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
80.6384
100.0000
57851389000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
81.4493
100.0000
65641495000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
43.4633
100.0000
379493000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
83.7838
100.0000
316000
qzeng-customINDELD6_15segdupwithalt*
0.0000
100.0000
00000
qzeng-customINDELD6_15segdupwithalthet
0.0000
100.0000
00000
qzeng-customINDELD6_15segdupwithalthomalt
0.0000
100.0000
00000
qzeng-customINDELI16_PLUSdecoy*
0.0000
100.0000
00000
qzeng-customINDELI16_PLUSdecoyhet
0.0000
100.0000
00000
qzeng-customINDELI16_PLUSdecoyhetalt
0.0000
100.0000
00000
qzeng-customINDELI16_PLUSdecoyhomalt
0.0000
100.0000
00000
qzeng-customINDELI16_PLUSfunc_cdshetalt
0.0000
100.0000
01000
qzeng-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000