PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8101-8150 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | tv | map_l150_m1_e0 | homalt | 36.1636 | 22.0730 | 100.0000 | 91.3831 | 871 | 3075 | 871 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e0 | homalt | 37.8797 | 23.3652 | 100.0000 | 91.8062 | 954 | 3129 | 954 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | homalt | 38.2313 | 23.6333 | 100.0000 | 91.7042 | 977 | 3157 | 977 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m0_e0 | homalt | 35.0427 | 21.2435 | 100.0000 | 98.4405 | 41 | 152 | 41 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | homalt | 29.3121 | 17.1729 | 100.0000 | 97.3637 | 147 | 709 | 147 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | homalt | 31.1712 | 18.4632 | 100.0000 | 97.3922 | 173 | 764 | 173 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m2_e1 | homalt | 31.5227 | 18.7104 | 100.0000 | 97.3700 | 177 | 769 | 177 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_siren | homalt | 69.9947 | 53.8399 | 100.0000 | 68.1997 | 9282 | 7958 | 9279 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.6239 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9353 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9433 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8390 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9297 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4334 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9388 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.6306 | 88.0240 | 100.0000 | 68.6848 | 147 | 20 | 150 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5045 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.8102 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8863 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.5410 | 95.2000 | 100.0000 | 30.0578 | 119 | 6 | 121 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4733 | 11 | 0 | 11 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.6357 | 38 | 2 | 38 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.2546 | 40 | 2 | 40 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 93.3665 | 40 | 3 | 40 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1613 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.8187 | 20 | 1 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.5056 | 20 | 1 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3846 | 21 | 2 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1154 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6562 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7011 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | segdup | hetalt | 96.8254 | 93.8462 | 100.0000 | 94.7679 | 122 | 8 | 124 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9975 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9961 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 43.7500 | 8 | 4 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.4545 | 91.3043 | 100.0000 | 78.1250 | 21 | 2 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 85.1852 | 8 | 1 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 61.0169 | 43.9024 | 100.0000 | 54.0925 | 144 | 184 | 129 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.7273 | 95.5556 | 100.0000 | 56.5657 | 43 | 2 | 43 | 0 | 0 | ||