PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8051-8100 / 86044 show all
ckim-vqsrSNPtimap_l125_m2_e1hetalt
40.0000
25.0000
100.0000
95.9732
618600
ckim-vqsrSNPtimap_l150_m0_e0homalt
33.4238
20.0652
100.0000
93.2216
554220755400
ckim-vqsrSNPtimap_l150_m1_e0hetalt
42.1053
26.6667
100.0000
96.1538
411400
ckim-vqsrSNPtimap_l150_m2_e0hetalt
42.1053
26.6667
100.0000
96.7742
411400
ckim-vqsrSNPtimap_l150_m2_e1hetalt
42.1053
26.6667
100.0000
96.7742
411400
ckim-vqsrSNPtimap_l250_m0_e0homalt
36.3977
22.2477
100.0000
97.9282
973399700
ckim-vqsrSNPtimap_l250_m1_e0homalt
35.0103
21.2197
100.0000
96.6137
341126634100
ckim-vqsrSNPtimap_l250_m2_e0homalt
35.8517
21.8411
100.0000
96.8007
382136738200
ckim-vqsrSNPtimap_l250_m2_e1homalt
36.0019
21.9526
100.0000
96.7910
389138338900
ckim-vqsrSNPtisegduphetalt
100.0000
100.0000
100.0000
99.2453
20200
ckim-vqsrSNPtitech_badpromotershet
98.8506
97.7273
100.0000
47.5610
4314300
ckim-vqsrSNPtvHG002complexvarhetalt
96.6667
93.5484
100.0000
40.6953
2902029000
ckim-vqsrSNPtvHG002compoundhethetalt
97.5030
95.1276
100.0000
23.3645
8204282000
ckim-vqsrSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
61.5385
1001000
ckim-vqsrSNPtvfunc_cdshomalt
99.7352
99.4718
100.0000
25.8206
16959169500
ckim-vqsrSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.8088
99.6183
100.0000
64.2221
522252200
ckim-vqsrSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.3333
1211200
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8959
99.7921
100.0000
45.3303
480148000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8726
99.7455
100.0000
61.9602
784278400
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8092
99.6190
100.0000
67.3737
523252300
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
91.7355
4014000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
30300
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.8333
10100
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_51to200*
93.8776
88.4615
100.0000
97.0361
2332300
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_51to200het
90.3226
82.3529
100.0000
97.5779
1431400
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.4082
90900
ckim-vqsrSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
50500
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.4715
98.9485
100.0000
36.3424
272929272900
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.4066
60600
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.6556
99.3135
100.0000
34.6057
13029130200
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5714
10100
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
ckim-vqsrSNPtvmap_l100_m0_e0hetalt
22.2222
12.5000
100.0000
98.1308
214200
ckim-vqsrSNPtvmap_l100_m0_e0homalt
42.2477
26.7811
100.0000
86.1726
10302816103000
ckim-vqsrSNPtvmap_l100_m1_e0hetalt
48.1481
31.7073
100.0000
94.6058
13281300
ckim-vqsrSNPtvmap_l100_m2_e0hetalt
50.0000
33.3333
100.0000
94.9640
14281400
ckim-vqsrSNPtvmap_l100_m2_e1hetalt
51.7241
34.8837
100.0000
94.6237
15281500
ckim-vqsrSNPtvmap_l125_m0_e0homalt
34.4391
20.8014
100.0000
91.7691
462175946200
ckim-vqsrSNPtvmap_l125_m1_e0hetalt
37.8378
23.3333
100.0000
96.4467
723700
ckim-vqsrSNPtvmap_l125_m2_e0hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNPtvmap_l125_m2_e1hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNPtvmap_l150_m0_e0homalt
29.9616
17.6205
100.0000
94.7814
234109423400
ckim-vqsrSNPtvmap_l150_m1_e0hetalt
33.3333
20.0000
100.0000
97.6608
416400