PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8001-8050 / 86044 show all
ckim-vqsrSNP*map_l125_m1_e0hetalt
37.8378
23.3333
100.0000
96.4467
723700
ckim-vqsrSNP*map_l125_m2_e0hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNP*map_l125_m2_e1hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNP*map_l150_m0_e0homalt
32.3149
19.2712
100.0000
93.7742
788330178800
ckim-vqsrSNP*map_l150_m1_e0hetalt
33.3333
20.0000
100.0000
97.6608
416400
ckim-vqsrSNP*map_l150_m2_e0hetalt
33.3333
20.0000
100.0000
98.0583
416400
ckim-vqsrSNP*map_l150_m2_e1hetalt
33.3333
20.0000
100.0000
98.0583
416400
ckim-vqsrSNP*map_l250_m0_e0homalt
35.9844
21.9396
100.0000
98.1124
13849113800
ckim-vqsrSNP*map_l250_m1_e0homalt
33.0735
19.8132
100.0000
96.8810
488197548800
ckim-vqsrSNP*map_l250_m2_e0homalt
34.2487
20.6627
100.0000
97.0120
555213155500
ckim-vqsrSNP*map_l250_m2_e1homalt
34.4702
20.8241
100.0000
96.9977
566215256600
ckim-vqsrSNP*segduphetalt
92.3077
85.7143
100.0000
98.6239
61600
ckim-vqsrSNP*tech_badpromotershet
98.6842
97.4026
100.0000
50.9804
7527500
ckim-vqsrSNPtiHG002complexvarhetalt
96.2406
92.7536
100.0000
40.3727
1921519200
ckim-vqsrSNPtiHG002compoundhethetalt
97.5221
95.1641
100.0000
22.7209
5512855100
ckim-vqsrSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
55.5556
80800
ckim-vqsrSNPtifunc_cdshomalt
99.7910
99.5829
100.0000
20.1550
525322525300
ckim-vqsrSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
88.3721
51500
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.7273
1201200
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8634
99.7271
100.0000
43.1128
14624146200
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
46.5753
858085800
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.7778
95.6522
100.0000
90.4348
6636600
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
10100
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3197
98.6486
100.0000
84.5612
438643800
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
10100
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.6068
99.2167
100.0000
83.3552
380338000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.7500
20200
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.7273
1201200
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8220
99.6445
100.0000
64.1135
16826168200
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_51to200*
96.7742
93.7500
100.0000
97.8754
1511500
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_51to200het
94.7368
90.0000
100.0000
98.3051
91900
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.5517
60600
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
85.7143
10100
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.5591
99.1221
100.0000
34.4828
395235395200
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
85.7143
100.0000
93.1350
3053000
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.4828
80800
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.4051
60600
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.9697
20200
ckim-vqsrSNPtimap_l100_m0_e0hetalt
25.0000
14.2857
100.0000
97.2973
212200
ckim-vqsrSNPtimap_l100_m0_e0homalt
46.9836
30.7049
100.0000
82.8803
23875387238700
ckim-vqsrSNPtimap_l100_m1_e0hetalt
51.2821
34.4828
100.0000
93.5065
10191000
ckim-vqsrSNPtimap_l100_m2_e0hetalt
53.6585
36.6667
100.0000
93.6416
11191100
ckim-vqsrSNPtimap_l100_m2_e1hetalt
55.8140
38.7097
100.0000
93.1034
12191200
ckim-vqsrSNPtimap_l125_m0_e0homalt
36.9577
22.6676
100.0000
90.0284
10183473101800
ckim-vqsrSNPtimap_l125_m1_e0hetalt
40.0000
25.0000
100.0000
95.0000
618600
ckim-vqsrSNPtimap_l125_m2_e0hetalt
40.0000
25.0000
100.0000
95.9732
618600