PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7901-7950 / 86044 show all
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
98.0392
96.1538
100.0000
54.0541
5025100
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
70.6897
6806800
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
98.6928
97.4194
100.0000
82.8829
151415200
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.1870
98.3871
100.0000
86.8365
6116200
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
96.4706
93.1818
100.0000
72.8477
4134100
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
81.5789
4904900
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8656
20200
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.3243
20200
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.6856
95.4758
100.0000
40.5222
6122961500
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200*
96.9529
94.0860
100.0000
69.8795
1751117500
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200het
95.5224
91.4286
100.0000
91.2281
3232500
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.2789
94.7020
100.0000
44.2379
143815000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.5192
99.0431
100.0000
47.9899
414441400
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_triTR_11to50het
99.1736
98.3607
100.0000
63.0435
120211900
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5763
99.1561
100.0000
23.6246
235223600
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
64.2424
5905900
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
67.5000
1301300
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
35.0000
1201300
ckim-vqsrINDELI6_15map_l100_m0_e0*
95.2381
90.9091
100.0000
93.9024
3033000
ckim-vqsrINDELI6_15map_l100_m0_e0het
96.9697
94.1176
100.0000
95.2522
1611600
ckim-vqsrINDELI6_15map_l100_m0_e0hetalt
85.7143
75.0000
100.0000
90.0000
31300
ckim-vqsrINDELI6_15map_l100_m0_e0homalt
95.6522
91.6667
100.0000
91.2000
1111100
ckim-vqsrINDELI6_15map_l100_m1_e0hetalt
95.2381
90.9091
100.0000
80.0000
2022000
ckim-vqsrINDELI6_15map_l100_m1_e0homalt
98.4615
96.9697
100.0000
89.0411
3213200
ckim-vqsrINDELI6_15map_l100_m2_e0hetalt
95.2381
90.9091
100.0000
81.6514
2022000
ckim-vqsrINDELI6_15map_l100_m2_e0homalt
98.4615
96.9697
100.0000
90.0312
3213200
ckim-vqsrINDELI6_15map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
82.3009
2022000
ckim-vqsrINDELI6_15map_l100_m2_e1homalt
98.4615
96.9697
100.0000
90.2141
3213200
ckim-vqsrINDELI6_15map_l125_m0_e0*
92.8571
86.6667
100.0000
96.5333
1321300
ckim-vqsrINDELI6_15map_l125_m0_e0het
94.1176
88.8889
100.0000
96.9582
81800
ckim-vqsrINDELI6_15map_l125_m0_e0homalt
90.9091
83.3333
100.0000
94.5652
51500
ckim-vqsrINDELI6_15map_l125_m1_e0hetalt
93.3333
87.5000
100.0000
87.0370
71700
ckim-vqsrINDELI6_15map_l125_m1_e0homalt
96.5517
93.3333
100.0000
93.1373
1411400
ckim-vqsrINDELI6_15map_l125_m2_e0hetalt
93.3333
87.5000
100.0000
88.8889
71700
ckim-vqsrINDELI6_15map_l125_m2_e0homalt
96.5517
93.3333
100.0000
93.9655
1411400
ckim-vqsrINDELI6_15map_l125_m2_e1hetalt
93.3333
87.5000
100.0000
89.2308
71700
ckim-vqsrINDELI6_15map_l125_m2_e1homalt
96.5517
93.3333
100.0000
94.1176
1411400
ckim-vqsrINDELI6_15map_l150_m0_e0*
93.3333
87.5000
100.0000
97.7987
71700
ckim-vqsrINDELI6_15map_l150_m0_e0het
100.0000
100.0000
100.0000
98.2456
40400
ckim-vqsrINDELI6_15map_l150_m0_e0homalt
85.7143
75.0000
100.0000
96.0526
31300
ckim-vqsrINDELI6_15map_l150_m1_e0*
95.8333
92.0000
100.0000
96.3082
2322300
ckim-vqsrINDELI6_15map_l150_m1_e0het
96.5517
93.3333
100.0000
96.7290
1411400
ckim-vqsrINDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
91.6667
30300
ckim-vqsrINDELI6_15map_l150_m1_e0homalt
92.3077
85.7143
100.0000
96.2264
61600
ckim-vqsrINDELI6_15map_l150_m2_e0*
95.8333
92.0000
100.0000
96.7422
2322300
ckim-vqsrINDELI6_15map_l150_m2_e0het
96.5517
93.3333
100.0000
97.0833
1411400
ckim-vqsrINDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
93.0233
30300
ckim-vqsrINDELI6_15map_l150_m2_e0homalt
92.3077
85.7143
100.0000
96.7213
61600
ckim-vqsrINDELI6_15map_l150_m2_e1*
96.1538
92.5926
100.0000
96.5847
2522500
ckim-vqsrINDELI6_15map_l150_m2_e1het
96.7742
93.7500
100.0000
96.9819
1511500