PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7801-7850 / 86044 show all
ckim-isaacSNPtitech_badpromotershomalt
94.8718
90.2439
100.0000
22.9167
3743700
ckim-isaacSNPtv*hetalt
96.5558
93.3410
100.0000
30.0946
8135881300
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
97.1429
94.4444
100.0000
83.4783
1711900
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
91.9732
2402400
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.2857
96.6292
100.0000
81.5451
172617200
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.1132
96.2963
100.0000
81.5552
104410200
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.0588
94.2857
100.0000
75.5245
3323500
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
85.1695
3503500
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4350
98.8764
100.0000
76.2803
8818800
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
76.0181
5305300
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
65.4545
1911900
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
83.1579
1601600
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.1538
92.5926
100.0000
92.1875
2522000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.7431
84.7458
100.0000
72.2222
5095500
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.6667
50.0000
100.0000
93.1034
22200
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
66.6667
50.0000
100.0000
75.0000
11200
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
92.8571
86.6667
100.0000
89.5161
1321300
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
94.3396
89.2857
100.0000
58.4615
2532700
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
97.3607
94.8571
100.0000
65.1452
166916800
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
91.6667
84.6154
100.0000
90.7563
2242200
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
90.4762
82.6087
100.0000
72.5000
1942200
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
98.6301
97.2973
100.0000
80.2139
3613700
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
96.7742
93.7500
100.0000
85.0000
1511500
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
65.8537
1301400
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
82.6087
80800
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
85.7143
75.0000
100.0000
75.0000
31300
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
40.0000
20300
ckim-vqsrINDELI16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
92.3077
10100
ckim-vqsrINDELI16_PLUSmap_l100_m0_e0homalt
100.0000
100.0000
100.0000
98.8304
20200
ckim-vqsrINDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
94.2857
21200
ckim-vqsrINDELI16_PLUSmap_l100_m1_e0homalt
100.0000
100.0000
100.0000
97.9592
50500
ckim-vqsrINDELI16_PLUSmap_l100_m2_e0hetalt
80.0000
66.6667
100.0000
94.8718
21200
ckim-vqsrINDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
95.0000
21200
ckim-vqsrINDELI16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
88.8889
10100
ckim-vqsrINDELI16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
98.6755
20200
ckim-vqsrINDELI16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
92.0000
21200
ckim-vqsrINDELI16_PLUSmap_l125_m1_e0homalt
100.0000
100.0000
100.0000
98.5222
30300
ckim-vqsrINDELI16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
92.3077
21200
ckim-vqsrINDELI16_PLUSmap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
92.3077
21200
ckim-vqsrINDELI16_PLUSmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.7143
10100
ckim-vqsrINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
99.2424
10100
ckim-vqsrINDELI16_PLUSmap_l150_m1_e0hetalt
66.6667
50.0000
100.0000
94.7368
11100
ckim-vqsrINDELI16_PLUSmap_l150_m1_e0homalt
100.0000
100.0000
100.0000
98.2857
30300
ckim-vqsrINDELI16_PLUSmap_l150_m2_e0hetalt
66.6667
50.0000
100.0000
94.7368
11100
ckim-vqsrINDELI16_PLUSmap_l150_m2_e0homalt
100.0000
100.0000
100.0000
98.3957
30300
ckim-vqsrINDELI16_PLUSmap_l150_m2_e1hetalt
66.6667
50.0000
100.0000
94.7368
11100
ckim-vqsrINDELI16_PLUSmap_l150_m2_e1homalt
100.0000
100.0000
100.0000
98.4043
30300
ckim-vqsrINDELI16_PLUSmap_sirenhetalt
100.0000
100.0000
100.0000
84.9558
1601700
ckim-vqsrINDELI16_PLUSmap_sirenhomalt
97.5610
95.2381
100.0000
95.6236
2012000
ckim-vqsrINDELI16_PLUSsegduphet
97.8723
95.8333
100.0000
97.1429
2312300