PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7751-7800 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | * | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 81.0127 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 81.0127 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.3016 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 72.4551 | 46 | 35 | 46 | 0 | 0 | ||
| ckim-isaac | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | * | tech_badpromoters | homalt | 94.7368 | 90.0000 | 100.0000 | 24.2105 | 72 | 8 | 72 | 0 | 0 | ||
| ckim-isaac | SNP | ti | * | hetalt | 96.1641 | 92.6117 | 100.0000 | 30.2717 | 539 | 43 | 539 | 0 | 0 | ||
| ckim-isaac | SNP | ti | HG002complexvar | hetalt | 92.7461 | 86.4734 | 100.0000 | 28.1124 | 179 | 28 | 179 | 0 | 0 | ||
| ckim-isaac | SNP | ti | HG002compoundhet | hetalt | 96.2366 | 92.7461 | 100.0000 | 18.6364 | 537 | 42 | 537 | 0 | 0 | ||
| ckim-isaac | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 27.2727 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | ti | func_cds | homalt | 99.4184 | 98.8436 | 100.0000 | 17.1197 | 5214 | 61 | 5214 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 64.2857 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 91.9355 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 94.7368 | 5 | 3 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 94.8052 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m0_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 77.7778 | 6 | 8 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m1_e0 | hetalt | 73.9130 | 58.6207 | 100.0000 | 74.2424 | 17 | 12 | 17 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 75.3425 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m2_e1 | hetalt | 76.0000 | 61.2903 | 100.0000 | 74.3243 | 19 | 12 | 19 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 85.7143 | 3 | 5 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 74.4681 | 12 | 12 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.1818 | 12 | 12 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.1818 | 12 | 12 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 83.7838 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.3659 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.2353 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 90.4762 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 90.4762 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_siren | hetalt | 70.4545 | 54.3860 | 100.0000 | 72.0721 | 31 | 26 | 31 | 0 | 0 | ||
| ckim-isaac | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1014 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | segdup | homalt | 98.2649 | 96.5889 | 100.0000 | 84.6188 | 7249 | 256 | 7249 | 0 | 0 | ||
| ckim-isaac | SNP | ti | tech_badpromoters | * | 91.7197 | 84.7059 | 100.0000 | 34.5455 | 72 | 13 | 72 | 0 | 0 | ||
| ckim-isaac | SNP | ti | tech_badpromoters | het | 88.6076 | 79.5455 | 100.0000 | 43.5484 | 35 | 9 | 35 | 0 | 0 | ||