PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7751-7800 / 86044 show all
ckim-isaacSNP*map_l125_m2_e0hetalt
66.6667
50.0000
100.0000
81.0127
15151500
ckim-isaacSNP*map_l125_m2_e1hetalt
66.6667
50.0000
100.0000
81.0127
15151500
ckim-isaacSNP*map_l150_m1_e0hetalt
57.1429
40.0000
100.0000
85.7143
812800
ckim-isaacSNP*map_l150_m2_e0hetalt
57.1429
40.0000
100.0000
87.0968
812800
ckim-isaacSNP*map_l150_m2_e1hetalt
57.1429
40.0000
100.0000
87.3016
812800
ckim-isaacSNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
92.3077
22200
ckim-isaacSNP*map_l250_m2_e0hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-isaacSNP*map_l250_m2_e1hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-isaacSNP*map_sirenhetalt
72.4409
56.7901
100.0000
72.4551
46354600
ckim-isaacSNP*segduphetalt
100.0000
100.0000
100.0000
93.8053
70700
ckim-isaacSNP*tech_badpromotershomalt
94.7368
90.0000
100.0000
24.2105
7287200
ckim-isaacSNPti*hetalt
96.1641
92.6117
100.0000
30.2717
5394353900
ckim-isaacSNPtiHG002complexvarhetalt
92.7461
86.4734
100.0000
28.1124
1792817900
ckim-isaacSNPtiHG002compoundhethetalt
96.2366
92.7461
100.0000
18.6364
5374253700
ckim-isaacSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
27.2727
80800
ckim-isaacSNPtifunc_cdshomalt
99.4184
98.8436
100.0000
17.1197
521461521400
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
64.2857
51500
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
85.7143
75.0000
100.0000
76.9231
93900
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
60.0000
20200
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
85.7143
75.0000
100.0000
76.9231
93900
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
91.9355
51500
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
75.0000
20200
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_51to200*
76.9231
62.5000
100.0000
94.7368
53500
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_51to200het
80.0000
66.6667
100.0000
94.8052
42400
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
93.7500
11100
ckim-isaacSNPtimap_l100_m0_e0hetalt
60.0000
42.8571
100.0000
77.7778
68600
ckim-isaacSNPtimap_l100_m1_e0hetalt
73.9130
58.6207
100.0000
74.2424
17121700
ckim-isaacSNPtimap_l100_m2_e0hetalt
75.0000
60.0000
100.0000
75.3425
18121800
ckim-isaacSNPtimap_l100_m2_e1hetalt
76.0000
61.2903
100.0000
74.3243
19121900
ckim-isaacSNPtimap_l125_m0_e0hetalt
54.5455
37.5000
100.0000
85.7143
35300
ckim-isaacSNPtimap_l125_m1_e0hetalt
66.6667
50.0000
100.0000
74.4681
12121200
ckim-isaacSNPtimap_l125_m2_e0hetalt
66.6667
50.0000
100.0000
78.1818
12121200
ckim-isaacSNPtimap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
78.1818
12121200
ckim-isaacSNPtimap_l150_m1_e0hetalt
57.1429
40.0000
100.0000
83.7838
69600
ckim-isaacSNPtimap_l150_m2_e0hetalt
57.1429
40.0000
100.0000
85.3659
69600
ckim-isaacSNPtimap_l150_m2_e1hetalt
57.1429
40.0000
100.0000
85.7143
69600
ckim-isaacSNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.2353
22200
ckim-isaacSNPtimap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
90.4762
23200
ckim-isaacSNPtimap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
90.4762
23200
ckim-isaacSNPtimap_sirenhetalt
70.4545
54.3860
100.0000
72.0721
31263100
ckim-isaacSNPtisegduphetalt
100.0000
100.0000
100.0000
97.1014
20200
ckim-isaacSNPtisegduphomalt
98.2649
96.5889
100.0000
84.6188
7249256724900
ckim-isaacSNPtitech_badpromoters*
91.7197
84.7059
100.0000
34.5455
72137200
ckim-isaacSNPtitech_badpromotershet
88.6076
79.5455
100.0000
43.5484
3593500