PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7701-7750 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m1_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 97.2222 | 1 | 6 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | * | 38.7097 | 24.0000 | 100.0000 | 97.7848 | 6 | 19 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 98.7069 | 3 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.6829 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 97.6744 | 1 | 6 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | * | 41.1765 | 25.9259 | 100.0000 | 97.8723 | 7 | 20 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | het | 40.0000 | 25.0000 | 100.0000 | 98.7395 | 4 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.1818 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 97.8723 | 1 | 7 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | * | 25.0000 | 14.2857 | 100.0000 | 99.4220 | 1 | 6 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.4545 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.0099 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 99.3548 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.8333 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | * | 40.0000 | 25.0000 | 100.0000 | 99.0431 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | het | 33.3333 | 20.0000 | 100.0000 | 99.3631 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.1538 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | segdup | hetalt | 91.5663 | 84.4444 | 100.0000 | 88.0126 | 38 | 7 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | segdup | homalt | 88.0952 | 78.7234 | 100.0000 | 87.9870 | 37 | 10 | 37 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | * | 96.0000 | 92.3077 | 100.0000 | 47.8261 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | * | hetalt | 96.5558 | 93.3410 | 100.0000 | 30.0946 | 813 | 58 | 813 | 0 | 0 | ||
| ckim-isaac | SNP | * | HG002complexvar | hetalt | 93.4708 | 87.7419 | 100.0000 | 29.5337 | 272 | 38 | 272 | 0 | 0 | ||
| ckim-isaac | SNP | * | HG002compoundhet | hetalt | 96.5807 | 93.3875 | 100.0000 | 18.9325 | 805 | 57 | 805 | 0 | 0 | ||
| ckim-isaac | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | func_cds | homalt | 99.3365 | 98.6818 | 100.0000 | 18.1191 | 6887 | 92 | 6887 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.1429 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.8889 | 80.0000 | 100.0000 | 79.6610 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 79.6610 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.4242 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.0820 | 6 | 3 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 75.7895 | 23 | 18 | 23 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 77.3585 | 24 | 18 | 24 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 85.7143 | 4 | 5 | 4 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.5714 | 15 | 15 | 15 | 0 | 0 | ||