PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7701-7750 / 86044 show all
ckim-isaacINDELI6_15map_l150_m1_e0hetalt
80.0000
66.6667
100.0000
90.6250
21300
ckim-isaacINDELI6_15map_l150_m1_e0homalt
25.0000
14.2857
100.0000
97.2222
16100
ckim-isaacINDELI6_15map_l150_m2_e0*
38.7097
24.0000
100.0000
97.7848
619700
ckim-isaacINDELI6_15map_l150_m2_e0het
33.3333
20.0000
100.0000
98.7069
312300
ckim-isaacINDELI6_15map_l150_m2_e0hetalt
80.0000
66.6667
100.0000
92.6829
21300
ckim-isaacINDELI6_15map_l150_m2_e0homalt
25.0000
14.2857
100.0000
97.6744
16100
ckim-isaacINDELI6_15map_l150_m2_e1*
41.1765
25.9259
100.0000
97.8723
720700
ckim-isaacINDELI6_15map_l150_m2_e1het
40.0000
25.0000
100.0000
98.7395
412300
ckim-isaacINDELI6_15map_l150_m2_e1hetalt
80.0000
66.6667
100.0000
93.1818
21300
ckim-isaacINDELI6_15map_l150_m2_e1homalt
22.2222
12.5000
100.0000
97.8723
17100
ckim-isaacINDELI6_15map_l250_m1_e0*
25.0000
14.2857
100.0000
99.4220
16100
ckim-isaacINDELI6_15map_l250_m1_e0homalt
50.0000
33.3333
100.0000
95.4545
12100
ckim-isaacINDELI6_15map_l250_m2_e0*
40.0000
25.0000
100.0000
99.0099
26200
ckim-isaacINDELI6_15map_l250_m2_e0het
33.3333
20.0000
100.0000
99.3548
14100
ckim-isaacINDELI6_15map_l250_m2_e0homalt
50.0000
33.3333
100.0000
95.8333
12100
ckim-isaacINDELI6_15map_l250_m2_e1*
40.0000
25.0000
100.0000
99.0431
26200
ckim-isaacINDELI6_15map_l250_m2_e1het
33.3333
20.0000
100.0000
99.3631
14100
ckim-isaacINDELI6_15map_l250_m2_e1homalt
50.0000
33.3333
100.0000
96.1538
12100
ckim-isaacINDELI6_15segduphetalt
91.5663
84.4444
100.0000
88.0126
3873800
ckim-isaacINDELI6_15segduphomalt
88.0952
78.7234
100.0000
87.9870
37103700
ckim-isaacINDELI6_15tech_badpromoters*
96.0000
92.3077
100.0000
47.8261
1211200
ckim-isaacINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
50.0000
70700
ckim-isaacINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
25.0000
30300
ckim-isaacINDELI6_15tech_badpromotershomalt
80.0000
66.6667
100.0000
60.0000
21200
ckim-isaacSNP**hetalt
96.5558
93.3410
100.0000
30.0946
8135881300
ckim-isaacSNP*HG002complexvarhetalt
93.4708
87.7419
100.0000
29.5337
2723827200
ckim-isaacSNP*HG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
ckim-isaacSNP*func_cdshetalt
100.0000
100.0000
100.0000
28.5714
1001000
ckim-isaacSNP*func_cdshomalt
99.3365
98.6818
100.0000
18.1191
688792688700
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
57.1429
1211200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
78.5714
30300
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
92.4242
1051000
ckim-isaacSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
64.2857
50500
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
28.5714
50500
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_51to200*
80.0000
66.6667
100.0000
95.0820
63600
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_51to200het
83.3333
71.4286
100.0000
94.9495
52500
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
95.0000
11100
ckim-isaacSNP*map_l100_m0_e0hetalt
60.8696
43.7500
100.0000
79.4118
79700
ckim-isaacSNP*map_l100_m1_e0hetalt
71.8750
56.0976
100.0000
75.7895
23182300
ckim-isaacSNP*map_l100_m2_e0hetalt
72.7273
57.1429
100.0000
77.3585
24182400
ckim-isaacSNP*map_l100_m2_e1hetalt
73.5294
58.1395
100.0000
76.6355
25182500
ckim-isaacSNP*map_l125_m0_e0hetalt
61.5385
44.4444
100.0000
85.7143
45400
ckim-isaacSNP*map_l125_m1_e0hetalt
66.6667
50.0000
100.0000
78.5714
15151500