PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7601-7650 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 86.1789 | 15 | 10 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 73.6842 | 58.3333 | 100.0000 | 85.2941 | 14 | 10 | 15 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 44.8276 | 16 | 4 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 64.3678 | 47.4576 | 100.0000 | 54.8387 | 28 | 31 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 67.0565 | 50.4399 | 100.0000 | 42.0339 | 172 | 169 | 171 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 67.2854 | 50.6993 | 100.0000 | 38.7234 | 145 | 141 | 144 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 45.8333 | 14 | 14 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.7143 | 75.0000 | 100.0000 | 81.2500 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 51.4286 | 34.6154 | 100.0000 | 86.1538 | 9 | 17 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 56.2500 | 39.1304 | 100.0000 | 60.0000 | 9 | 14 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 76.1905 | 61.5385 | 100.0000 | 61.9048 | 8 | 5 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 25.0000 | 100.0000 | 66.6667 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | map_siren | homalt | 9.0909 | 4.7619 | 100.0000 | 95.8333 | 1 | 20 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.5882 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | segdup | homalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | tech_badpromoters | * | 40.0000 | 25.0000 | 100.0000 | 80.0000 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | func_cds | homalt | 98.2906 | 96.6387 | 100.0000 | 22.2973 | 115 | 4 | 115 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9002 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 89.1967 | 80.5000 | 100.0000 | 50.1548 | 161 | 39 | 161 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8958 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.5000 | 77.7778 | 100.0000 | 95.7447 | 21 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9874 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9394 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 20.0000 | 14 | 9 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.4286 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | het | 84.7826 | 73.5849 | 100.0000 | 94.4681 | 78 | 28 | 78 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.0149 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.8905 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.4839 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.0617 | 8 | 2 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | * | 76.9231 | 62.5000 | 100.0000 | 98.4600 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | homalt | 71.4286 | 55.5556 | 100.0000 | 95.3704 | 5 | 4 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | * | 73.0539 | 57.5472 | 100.0000 | 96.9176 | 61 | 45 | 61 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | het | 78.7879 | 65.0000 | 100.0000 | 97.5549 | 39 | 21 | 39 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7952 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | homalt | 64.6154 | 47.7273 | 100.0000 | 93.0233 | 21 | 23 | 21 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | * | 74.4444 | 59.2920 | 100.0000 | 97.1108 | 67 | 46 | 67 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.9691 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | homalt | 65.6716 | 48.8889 | 100.0000 | 94.1176 | 22 | 23 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | * | 74.7253 | 59.6491 | 100.0000 | 97.1536 | 68 | 46 | 68 | 0 | 0 | ||