PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7551-7600 / 86044 show all
ckim-isaacINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacINDELD1_5tech_badpromotershomalt
94.1176
88.8889
100.0000
27.2727
81800
ckim-isaacINDELD6_15decoy*
100.0000
100.0000
100.0000
99.8742
10100
ckim-isaacINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.2063
10100
ckim-isaacINDELD6_15func_cdshetalt
66.6667
50.0000
100.0000
66.6667
11200
ckim-isaacINDELD6_15func_cdshomalt
95.6522
91.6667
100.0000
54.1667
1111100
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
95.9596
42400
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
80.0000
66.6667
100.0000
96.8750
21200
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
85.7143
75.0000
100.0000
96.8421
31300
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.3871
11100
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
75.0000
11100
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
87.2093
77.3196
100.0000
23.0000
75227700
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
95.0000
90.4762
100.0000
24.0000
1921900
ckim-isaacINDELD6_15map_l100_m0_e0hetalt
84.8485
73.6842
100.0000
78.7879
1451400
ckim-isaacINDELD6_15map_l100_m0_e0homalt
62.8571
45.8333
100.0000
74.4186
11131100
ckim-isaacINDELD6_15map_l100_m1_e0homalt
60.8696
43.7500
100.0000
72.0000
28362800
ckim-isaacINDELD6_15map_l100_m2_e0homalt
61.7021
44.6154
100.0000
73.6364
29362900
ckim-isaacINDELD6_15map_l100_m2_e1homalt
60.4167
43.2836
100.0000
74.5614
29382900
ckim-isaacINDELD6_15map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
90.4762
42400
ckim-isaacINDELD6_15map_l125_m0_e0homalt
58.8235
41.6667
100.0000
81.4815
57500
ckim-isaacINDELD6_15map_l125_m1_e0homalt
64.0000
47.0588
100.0000
75.7576
16181600
ckim-isaacINDELD6_15map_l125_m2_e0homalt
64.1509
47.2222
100.0000
75.7143
17191700
ckim-isaacINDELD6_15map_l125_m2_e1homalt
62.9630
45.9459
100.0000
76.3889
17201700
ckim-isaacINDELD6_15map_l150_m0_e0hetalt
75.0000
60.0000
100.0000
91.6667
32300
ckim-isaacINDELD6_15map_l150_m0_e0homalt
44.4444
28.5714
100.0000
90.4762
25200
ckim-isaacINDELD6_15map_l150_m1_e0hetalt
85.7143
75.0000
100.0000
89.8305
62600
ckim-isaacINDELD6_15map_l150_m1_e0homalt
59.4595
42.3077
100.0000
77.5510
11151100
ckim-isaacINDELD6_15map_l150_m2_e0hetalt
85.7143
75.0000
100.0000
91.3043
62600
ckim-isaacINDELD6_15map_l150_m2_e0homalt
60.0000
42.8571
100.0000
79.3103
12161200
ckim-isaacINDELD6_15map_l150_m2_e1hetalt
80.0000
66.6667
100.0000
91.5493
63600
ckim-isaacINDELD6_15map_l150_m2_e1homalt
58.5366
41.3793
100.0000
80.0000
12171200
ckim-isaacINDELD6_15map_l250_m0_e0*
50.0000
33.3333
100.0000
98.5612
24200
ckim-isaacINDELD6_15map_l250_m0_e0het
40.0000
25.0000
100.0000
99.0566
13100
ckim-isaacINDELD6_15map_l250_m0_e0homalt
66.6667
50.0000
100.0000
92.3077
11100
ckim-isaacINDELD6_15map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
96.7742
11100
ckim-isaacINDELD6_15map_l250_m1_e0homalt
57.1429
40.0000
100.0000
91.3043
23200
ckim-isaacINDELD6_15map_l250_m2_e0hetalt
66.6667
50.0000
100.0000
97.3684
11100
ckim-isaacINDELD6_15map_l250_m2_e0homalt
50.0000
33.3333
100.0000
92.5926
24200
ckim-isaacINDELD6_15map_l250_m2_e1hetalt
66.6667
50.0000
100.0000
97.5000
11100
ckim-isaacINDELD6_15map_l250_m2_e1homalt
50.0000
33.3333
100.0000
93.1034
24200
ckim-isaacINDELD6_15segduphetalt
88.6364
79.5918
100.0000
89.4472
39104200
ckim-isaacINDELD6_15tech_badpromoters*
96.9697
94.1176
100.0000
48.3871
1611600
ckim-isaacINDELD6_15tech_badpromotershet
94.7368
90.0000
100.0000
57.8947
91800
ckim-isaacINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10200
ckim-isaacINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
40.0000
60600
ckim-isaacINDELI16_PLUSfunc_cds*
85.7143
75.0000
100.0000
55.0000
93900
ckim-isaacINDELI16_PLUSfunc_cdshet
87.5000
77.7778
100.0000
46.1538
72700