PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7501-7550 / 86044 show all
ckim-isaacINDELD16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
93.1034
21200
ckim-isaacINDELD16_PLUSmap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
93.1034
22200
ckim-isaacINDELD16_PLUSmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
94.1176
10100
ckim-isaacINDELD16_PLUSmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
94.7368
10100
ckim-isaacINDELD16_PLUSmap_l150_m2_e1hetalt
66.6667
50.0000
100.0000
94.7368
11100
ckim-isaacINDELD16_PLUSmap_l250_m1_e0*
40.0000
25.0000
100.0000
98.7179
13100
ckim-isaacINDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
88.8889
10100
ckim-isaacINDELD16_PLUSmap_l250_m2_e0*
33.3333
20.0000
100.0000
98.9583
14100
ckim-isaacINDELD16_PLUSmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
91.6667
10100
ckim-isaacINDELD16_PLUSmap_l250_m2_e1*
33.3333
20.0000
100.0000
99.0000
14100
ckim-isaacINDELD16_PLUSmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
92.3077
10100
ckim-isaacINDELD16_PLUSmap_sirenhetalt
52.3810
35.4839
100.0000
87.6404
11201100
ckim-isaacINDELD16_PLUSsegduphetalt
61.5385
44.4444
100.0000
95.7746
45600
ckim-isaacINDELD16_PLUSsegduphomalt
100.0000
100.0000
100.0000
89.3805
1201200
ckim-isaacINDELD16_PLUStech_badpromoters*
85.7143
75.0000
100.0000
40.0000
31300
ckim-isaacINDELD16_PLUStech_badpromotershet
85.7143
75.0000
100.0000
0.0000
31200
ckim-isaacINDELD16_PLUStech_badpromotershetalt
0.0000
0.0000
100.0000
0.0000
00100
ckim-isaacINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9392
40400
ckim-isaacINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9618
20200
ckim-isaacINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.6732
10100
ckim-isaacINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9039
10100
ckim-isaacINDELD1_5func_cds*
99.3671
98.7421
100.0000
33.7553
157215700
ckim-isaacINDELD1_5func_cdshet
100.0000
100.0000
100.0000
42.5676
8508500
ckim-isaacINDELD1_5func_cdshomalt
98.6301
97.2973
100.0000
17.2414
7227200
ckim-isaacINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
90.0000
81.8182
100.0000
99.2007
92900
ckim-isaacINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
85.7143
75.0000
100.0000
99.3392
62600
ckim-isaacINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.1481
10100
ckim-isaacINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.7805
20200
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
94.7368
90.0000
100.0000
99.1682
91900
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
92.3077
85.7143
100.0000
99.3111
61600
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.9167
10100
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.7730
20200
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
98.0843
96.2406
100.0000
31.1996
128050127900
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
87.3563
77.5510
100.0000
20.0000
38114000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
96.0000
92.3077
100.0000
20.0000
1211200
ckim-isaacINDELD1_5map_l100_m0_e0homalt
74.7573
59.6899
100.0000
74.1176
15410415400
ckim-isaacINDELD1_5map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
98.0000
21200
ckim-isaacINDELD1_5map_l125_m0_e0homalt
70.1754
54.0541
100.0000
79.5396
80688000
ckim-isaacINDELD1_5map_l150_m0_e0homalt
65.0794
48.2353
100.0000
84.9265
41444100
ckim-isaacINDELD1_5map_l150_m1_e0hetalt
72.7273
57.1429
100.0000
98.0892
43300
ckim-isaacINDELD1_5map_l150_m2_e0hetalt
72.7273
57.1429
100.0000
98.3696
43300
ckim-isaacINDELD1_5map_l150_m2_e1hetalt
76.9231
62.5000
100.0000
97.9058
53400
ckim-isaacINDELD1_5map_l250_m0_e0homalt
47.0588
30.7692
100.0000
97.2028
49400
ckim-isaacINDELD1_5map_l250_m1_e0homalt
51.9481
35.0877
100.0000
93.7695
20372000
ckim-isaacINDELD1_5map_l250_m2_e0homalt
53.6585
36.6667
100.0000
94.3005
22382200
ckim-isaacINDELD1_5map_l250_m2_e1homalt
53.6585
36.6667
100.0000
94.4584
22382200
ckim-isaacINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9921
10100
ckim-isaacINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9889
10100
ckim-isaacINDELD1_5tech_badpromoters*
94.4444
89.4737
100.0000
32.0000
1721700
ckim-isaacINDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
41.6667
71700