PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1475 1476 1477 1478 1479 1480 1481 1482 1483 ... 1720 1721 » 73901-73950 / 86044 show all
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	0.2589	0.0000	0.0000	5	1926	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	0.2551	0.0000	0.0000	2	782	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	0.0000	0.2278	0.0000	0.0000	1	438	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt		0.0000	0.0000	0.0000	0	12	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000	0.0000	0.0000	0	9	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	0.0000	0.3049	0.0000	0.0000	1	327	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	350	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000	0.0000	0.0000	0	51	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	25	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l100_m0_e0	hetalt		0.0000	0.0000	0.0000	0	4	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l100_m1_e0	hetalt	0.0000	3.8462	0.0000	0.0000	1	25	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l100_m2_e0	hetalt	0.0000	3.8462	0.0000	0.0000	1	25	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l100_m2_e1	hetalt	0.0000	3.3333	0.0000	0.0000	1	29	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l125_m0_e0	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l125_m1_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l125_m2_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l125_m2_e1	hetalt		0.0000	0.0000	0.0000	0	4	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l150_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l150_m2_e0	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l150_m2_e1	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_siren	hetalt	0.0000	3.2258	0.0000	0.0000	1	30	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	segdup	hetalt		0.0000	0.0000	0.0000	0	9	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D1_5	*	hetalt	0.0000	0.5076	0.0000	0.0000	52	10193	0	0	0
jpowers-varprowl	INDEL	D1_5	HG002complexvar	hetalt	0.0000	1.9970	0.0000	0.0000	27	1325	0	0	0
jpowers-varprowl	INDEL	D1_5	HG002compoundhet	hetalt	0.0000	0.4992	0.0000	0.0000	51	10165	0	0	0
jpowers-varprowl	INDEL	D1_5	decoy	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D1_5	func_cds	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	0.2744	0.0000	0.0000	5	1817	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	0.5379	0.0000	0.0000	50	9246	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	0.4843	0.0000	0.0000	45	9246	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	1.4493	0.0000	0.0000	1	68	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	1.3514	0.0000	0.0000	1	73	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	2.7027	0.0000	0.0000	1	36	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	0.2324	0.0000	0.0000	3	1288	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge