PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7101-7150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.1429 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 91.0448 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 93.4426 | 0 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 94.5205 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 89.4737 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.6089 | 1 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 100.0000 | 100.0000 | 100.0000 | 99.3080 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.4083 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.1308 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4359 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 95.3846 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 95.5556 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.6667 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 95.9091 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.0396 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3488 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 95.9821 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.1165 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.0588 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4023 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.5915 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.4615 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.1481 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.6395 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3051 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 98.6755 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3333 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.0099 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.1304 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 99.1525 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 100.0000 | 97.3856 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.2248 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.6111 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 100.0000 | 66.6667 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 66.6667 | 1 | 3 | 1 | 0 | 0 | ||