PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69701-69750 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 96.3636 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 96.0784 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 94.8718 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 96.8000 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 95.7895 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 96.8504 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 95.8763 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 96.2025 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 95.0820 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 96.7391 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 96.8085 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 95.7746 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 96.4286 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 98.0392 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 98.0769 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D16_PLUS | * | hetalt | 0.0000 | 90.8432 | 0.0000 | 0.0000 | 1756 | 177 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 82.1862 | 0.0000 | 0.0000 | 203 | 44 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 90.9751 | 0.0000 | 0.0000 | 1754 | 174 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.6667 | 0.0000 | 0.0000 | 845 | 130 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 93.9722 | 0.0000 | 0.0000 | 1216 | 78 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 90.8338 | 0.0000 | 0.0000 | 1754 | 177 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 72.7273 | 0.0000 | 0.0000 | 8 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||