PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6601-6650 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.4901 | 38 | 2 | 38 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.1507 | 40 | 2 | 40 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 93.2660 | 40 | 3 | 40 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0820 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.7507 | 20 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.4233 | 20 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3020 | 21 | 2 | 21 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0297 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5806 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6378 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_siren | hetalt | 96.8685 | 93.9271 | 100.0000 | 86.9855 | 232 | 15 | 234 | 0 | 0 | ||
| astatham-gatk | INDEL | * | segdup | hetalt | 96.8254 | 93.8462 | 100.0000 | 94.7122 | 122 | 8 | 124 | 0 | 0 | ||
| astatham-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9974 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9960 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9969 | 1 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.9954 | 0 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9924 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9248 | 99.8496 | 100.0000 | 41.6849 | 1328 | 2 | 1329 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 91.8367 | 100.0000 | 26.2295 | 45 | 4 | 45 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.2857 | 12 | 2 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 96.7033 | 93.6170 | 100.0000 | 91.0020 | 44 | 3 | 44 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 91.2381 | 45 | 3 | 46 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 96.9697 | 94.1176 | 100.0000 | 90.9259 | 48 | 3 | 49 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8571 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 96.0784 | 12 | 1 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.9770 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 96.0894 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1818 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.8102 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.5265 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1013 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1707 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_siren | hetalt | 97.5610 | 95.2381 | 100.0000 | 90.8987 | 80 | 4 | 80 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6266 | 51 | 1 | 52 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9949 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9927 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 46.6667 | 8 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9306 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8764 | 1 | 0 | 1 | 0 | 0 | ||