PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
6351-6400 / 86044 show all
asubramanian-gatkSNPtvmap_l250_m0_e0het
28.2282
16.4336
100.0000
99.2644
944789400
asubramanian-gatkSNPtvmap_l250_m0_e0homalt
28.4444
16.5803
100.0000
98.7688
321613200
asubramanian-gatkSNPtvmap_l250_m1_e0homalt
22.5907
12.7336
100.0000
97.9792
10974710900
asubramanian-gatkSNPtvmap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
98.5915
14100
asubramanian-gatkSNPtvmap_l250_m2_e0homalt
24.5318
13.9808
100.0000
97.9454
13180613100
asubramanian-gatkSNPtvmap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
98.5915
14100
asubramanian-gatkSNPtvmap_l250_m2_e1homalt
24.8148
14.1649
100.0000
97.9315
13481213400
asubramanian-gatkSNPtvmap_sirenhetalt
65.0000
48.1481
100.0000
83.7500
39423900
asubramanian-gatkSNPtvsegduphetalt
92.3077
85.7143
100.0000
97.5000
61600
asubramanian-gatkSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
56.1644
3213200
bgallagher-sentieonINDEL*decoy*
100.0000
100.0000
100.0000
99.9337
1001000
bgallagher-sentieonINDEL*decoyhet
100.0000
100.0000
100.0000
99.9414
60600
bgallagher-sentieonINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8252
10100
bgallagher-sentieonINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9295
30300
bgallagher-sentieonINDEL*func_cdshetalt
88.8889
80.0000
100.0000
60.0000
41400
bgallagher-sentieonINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4118
1201200
bgallagher-sentieonINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.7391
30300
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
92.6045
86.2275
100.0000
68.7898
1442314700
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4856
1001000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.3415
30300
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7273
30300
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.9167
20200
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.1538
10100
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8731
1601600
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9633
2102100
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
96.2656
92.8000
100.0000
29.3413
116911800
bgallagher-sentieonINDEL*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
94.9541
1101100
bgallagher-sentieonINDEL*map_l125_m1_e0hetalt
97.4359
95.0000
100.0000
91.8455
3823800
bgallagher-sentieonINDEL*map_l125_m2_e0hetalt
97.5610
95.2381
100.0000
92.5512
4024000
bgallagher-sentieonINDEL*map_l125_m2_e1hetalt
96.3855
93.0233
100.0000
92.6874
4034000
bgallagher-sentieonINDEL*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
94.4785
90900
bgallagher-sentieonINDEL*map_l150_m1_e0hetalt
97.5610
95.2381
100.0000
94.2693
2012000
bgallagher-sentieonINDEL*map_l150_m2_e0hetalt
97.5610
95.2381
100.0000
94.9875
2012000
bgallagher-sentieonINDEL*map_l150_m2_e1hetalt
95.4545
91.3043
100.0000
94.8655
2122100
bgallagher-sentieonINDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
96.7033
60600
bgallagher-sentieonINDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
97.3094
60600
bgallagher-sentieonINDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
97.3684
60600
bgallagher-sentieonINDEL*segduphetalt
96.4143
93.0769
100.0000
94.3681
121912300
bgallagher-sentieonINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9974
10100
bgallagher-sentieonINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9960
10100
bgallagher-sentieonINDEL*tech_badpromoters*
99.3377
98.6842
100.0000
54.5455
7517500
bgallagher-sentieonINDEL*tech_badpromotershet
98.7013
97.4359
100.0000
52.5000
3813800
bgallagher-sentieonINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
bgallagher-sentieonINDEL*tech_badpromotershomalt
100.0000
100.0000
100.0000
57.1429
3303300
bgallagher-sentieonINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.2718
60600
bgallagher-sentieonINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
99.3162
40400
bgallagher-sentieonINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.0244
20200
bgallagher-sentieonINDELD16_PLUSfunc_cds*
100.0000
100.0000
100.0000
79.6610
1201200
bgallagher-sentieonINDELD16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
81.8182
80800
bgallagher-sentieonINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
73.3333
40400