PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5951-6000 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4286 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 98.5294 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7528 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | decoy | * | 66.6667 | 50.0000 | 100.0000 | 98.7603 | 3 | 3 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | decoy | het | 66.6667 | 50.0000 | 100.0000 | 98.9848 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | decoy | homalt | 66.6667 | 50.0000 | 100.0000 | 97.7778 | 1 | 1 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | func_cds | * | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | func_cds | het | 76.9231 | 62.5000 | 100.0000 | 64.2857 | 5 | 3 | 5 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 48.2759 | 31.8182 | 100.0000 | 91.5730 | 14 | 30 | 15 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.6102 | 2 | 3 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.1831 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.3333 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.4359 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.6102 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 95.1807 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | het | 40.0000 | 25.0000 | 100.0000 | 0.0000 | 1 | 3 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9735 | 2 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9921 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | * | 88.2353 | 78.9474 | 100.0000 | 40.0000 | 15 | 4 | 15 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 22.2222 | 7 | 1 | 7 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 50.0000 | 8 | 1 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 57.8947 | 8 | 4 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 2 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | func_cds | het | 50.0000 | 33.3333 | 100.0000 | 0.0000 | 3 | 6 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 12.5000 | 6.6667 | 100.0000 | 94.1176 | 1 | 14 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | het | 22.2222 | 12.5000 | 100.0000 | 80.0000 | 1 | 7 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | het | 10.5263 | 5.5556 | 100.0000 | 90.9091 | 1 | 17 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | het | 10.5263 | 5.5556 | 100.0000 | 92.3077 | 1 | 17 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e1 | het | 10.5263 | 5.5556 | 100.0000 | 92.3077 | 1 | 17 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | het | 20.0000 | 11.1111 | 100.0000 | 85.7143 | 1 | 8 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e0 | het | 20.0000 | 11.1111 | 100.0000 | 90.9091 | 1 | 8 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e1 | het | 20.0000 | 11.1111 | 100.0000 | 90.9091 | 1 | 8 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | segdup | het | 34.4828 | 20.8333 | 100.0000 | 91.2281 | 5 | 19 | 5 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | tech_badpromoters | homalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.2925 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.3421 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0291 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 12 | 0 | 12 | 0 | 0 | ||