PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5851-5900 / 86044 show all
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
96.7742
93.7500
100.0000
99.8973
1511500
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9636
2102100
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.1193
94.4000
100.0000
28.7356
118712400
asubramanian-gatkINDEL*map_l100_m0_e0hetalt
95.2381
90.9091
100.0000
91.8159
3033200
asubramanian-gatkINDEL*map_l125_m0_e0hetalt
95.2381
90.9091
100.0000
95.7031
1011100
asubramanian-gatkINDEL*map_l125_m1_e0hetalt
96.1039
92.5000
100.0000
93.3333
3733700
asubramanian-gatkINDEL*map_l125_m2_e0hetalt
96.2963
92.8571
100.0000
93.8583
3933900
asubramanian-gatkINDEL*map_l125_m2_e1hetalt
95.1220
90.6977
100.0000
93.9908
3943900
asubramanian-gatkINDEL*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
95.0739
901000
asubramanian-gatkINDEL*map_l150_m1_e0hetalt
95.0000
90.4762
100.0000
95.2607
1922000
asubramanian-gatkINDEL*map_l150_m2_e0hetalt
95.0000
90.4762
100.0000
95.8763
1922000
asubramanian-gatkINDEL*map_l150_m2_e1hetalt
93.0233
86.9565
100.0000
95.7916
2032100
asubramanian-gatkINDEL*map_l250_m1_e0hetalt
90.9091
83.3333
100.0000
97.4026
51600
asubramanian-gatkINDEL*map_l250_m2_e0hetalt
90.9091
83.3333
100.0000
97.8723
51600
asubramanian-gatkINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
97.9239
51600
asubramanian-gatkINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9985
10200
asubramanian-gatkINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9932
10200
asubramanian-gatkINDEL*tech_badpromoters*
97.2973
94.7368
100.0000
69.0987
7247200
asubramanian-gatkINDEL*tech_badpromotershet
98.7013
97.4359
100.0000
53.6585
3813800
asubramanian-gatkINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
asubramanian-gatkINDEL*tech_badpromotershomalt
95.2381
90.9091
100.0000
60.5263
3033000
asubramanian-gatkINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.4382
60600
asubramanian-gatkINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
99.5056
40400
asubramanian-gatkINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.1304
20200
asubramanian-gatkINDELD16_PLUSfunc_cds*
100.0000
100.0000
100.0000
82.3529
1201200
asubramanian-gatkINDELD16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
84.0000
80800
asubramanian-gatkINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
77.7778
40400
asubramanian-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.5560
40400
asubramanian-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8512
10100
asubramanian-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.8571
10100
asubramanian-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.0698
20200
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.5444
40400
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8469
10100
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
10100
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.0610
20200
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.6522
91.6667
100.0000
45.8333
1111300
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.2840
98.5782
100.0000
47.6071
208320800
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
56.7568
1201600
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
92.9134
86.7647
100.0000
97.2936
5995900
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
90.0000
81.8182
100.0000
97.4286
3683600
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
94.1176
88.8889
100.0000
94.2029
81800
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
97.6636
1501500
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
99.0099
98.0392
100.0000
24.2857
5015300
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
66.6667
4504500
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
95.8333
92.0000
100.0000
44.4444
2322500
asubramanian-gatkINDELD16_PLUSmap_l100_m0_e0hetalt
85.7143
75.0000
100.0000
92.5926
31400
asubramanian-gatkINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.8947
20200
asubramanian-gatkINDELD16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
95.2381
21200
asubramanian-gatkINDELD16_PLUSmap_l125_m1_e0homalt
100.0000
100.0000
100.0000
98.0861
40400
asubramanian-gatkINDELD16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
95.4545
21200