PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53601-53650 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 20.0000 | 97.8939 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 20.0000 | 77.2727 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | * | 16.6667 | 14.2857 | 20.0000 | 81.4815 | 1 | 6 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.1667 | 53.8462 | 20.0000 | 79.3388 | 7 | 6 | 10 | 40 | 13 | 32.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 1.8576 | 0.9740 | 20.0000 | 60.0000 | 6 | 610 | 6 | 24 | 17 | 70.8333 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 3.3520 | 1.8293 | 20.0000 | 59.4595 | 3 | 161 | 6 | 24 | 17 | 70.8333 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5581 | 87.5000 | 20.0000 | 45.0262 | 21 | 3 | 21 | 84 | 84 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 100.0000 | 20.0000 | 96.1240 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 33.3333 | 100.0000 | 20.0000 | 95.4955 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 33.3333 | 100.0000 | 20.0000 | 50.0000 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 33.3333 | 100.0000 | 20.0000 | 50.0000 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 20.0000 | 89.5833 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 20.0000 | 95.5357 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 20.0000 | 70.5882 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | C6_15 | * | het | 16.6667 | 14.2857 | 20.0000 | 78.2609 | 1 | 6 | 1 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 20.0000 | 90.1961 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 85.4167 | 0 | 0 | 14 | 56 | 3 | 5.3571 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 64.2857 | 0 | 2 | 1 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 98.0159 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 33.3333 | 100.0000 | 20.0000 | 92.9178 | 5 | 0 | 5 | 20 | 4 | 20.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.0706 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.1497 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.1830 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.1857 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 91.1504 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 82.1429 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 20.0000 | 96.6216 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.3333 | 100.0000 | 20.0000 | 88.0952 | 1 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 20.0000 | 87.7049 | 0 | 0 | 6 | 24 | 4 | 16.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 20.0000 | 87.0690 | 0 | 0 | 6 | 24 | 4 | 16.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 97.7827 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 96.0630 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 97.8903 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 20.0000 | 97.4227 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 20.0000 | 97.0238 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 20.0000 | 96.8944 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 33.3333 | 100.0000 | 20.0000 | 91.8033 | 2 | 0 | 1 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 33.3333 | 100.0000 | 20.0000 | 90.3846 | 2 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 20.0000 | 93.3333 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 96.9697 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 96.7105 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 22.7901 | 26.5957 | 19.9372 | 79.3316 | 125 | 345 | 127 | 510 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | * | 17.0370 | 14.9082 | 19.8751 | 36.5405 | 349 | 1992 | 350 | 1411 | 1404 | 99.5039 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 31.6999 | 78.9855 | 19.8291 | 89.3462 | 218 | 58 | 232 | 938 | 21 | 2.2388 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 13.8244 | 10.6122 | 19.8251 | 85.5882 | 52 | 438 | 68 | 275 | 74 | 26.9091 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 19.2946 | 18.8525 | 19.7581 | 78.5095 | 92 | 396 | 49 | 199 | 5 | 2.5126 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.7368 | 95.1157 | 0 | 0 | 15 | 61 | 10 | 16.3934 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 32.7901 | 97.1831 | 19.7222 | 22.4138 | 69 | 2 | 71 | 289 | 266 | 92.0415 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.6970 | 95.3092 | 0 | 0 | 13 | 53 | 8 | 15.0943 | |
| ciseli-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 19.6429 | 91.7708 | 0 | 0 | 22 | 90 | 37 | 41.1111 | |